Class ReactionRenderer
IChemModel
s, IReaction
s, and
IAtomContainer
s. The chem object
is converted into a 'diagram' made up of IRenderingElement
s. It takes
an IDrawVisitor
to do the drawing of the generated diagram. Various
display properties can be set using the RendererModel
.This class has several usage patterns. For just painting fit-to-screen do:
renderer.paintMolecule(molecule, visitor, drawArea)for painting at a scale determined by the bond length in the RendererModel:
if (moleculeIsNew) { renderer.setup(molecule, drawArea); } Rectangle diagramSize = renderer.paintMolecule(molecule, visitor); // ...update scroll bars hereto paint at full screen size, but not resize with each change:
if (moleculeIsNew) { renderer.setScale(molecule); Rectangle diagramBounds = renderer.calculateDiagramBounds(molecule); renderer.setZoomToFit(diagramBounds, drawArea); renderer.paintMolecule(molecule, visitor); } else { Rectangle diagramSize = renderer.paintMolecule(molecule, visitor); // ...update scroll bars here }finally, if you are scrolling, and have not changed the diagram:
renderer.repaint(visitor)will just repaint the previously generated diagram, at the same scale.
There are two sets of methods for painting IChemObjects - those that take
a Rectangle that represents the desired draw area, and those that return a
Rectangle that represents the actual draw area. The first are intended for
drawing molecules fitted to the screen (where 'screen' means any drawing
area) while the second type of method are for drawing bonds at the length
defined by the RendererModel
parameter bondLength.
There are two numbers used to transform the model so that it fits on screen.
The first is scale
, which is used to map model coordinates to
screen coordinates. The second is zoom
which is used to, well,
zoom the on screen coordinates. If the diagram is fit-to-screen, then the
ratio of the bounds when drawn using bondLength and the bounds of
the screen is used as the zoom.
So, if the bond length on screen is set to 40, and the average bond length of the model is 2 (unitless, but roughly Ångstrom scale) then the scale will be 20. If the model is 10 units wide, then the diagram drawn at 100% zoom will be 10 * 20 = 200 in width on screen. If the screen is 400 pixels wide, then fitting it to the screen will make the zoom 200%. Since the zoom is just a floating point number, 100% = 1 and 200% = 2.
- Author:
- maclean
- Source code:
- main
- Belongs to CDK module:
- renderextra
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Field Summary
Fields inherited from class org.openscience.cdk.renderer.AbstractRenderer
cachedDiagram, drawCenter, fontManager, generators, modelCenter, rendererModel, transform
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Constructor Summary
ConstructorsConstructorDescriptionReactionRenderer
(List<IGenerator<IAtomContainer>> generators, List<IGenerator<IReaction>> reactionGenerators, IFontManager fontManager) A renderer that drawsIReaction
s with the passedIGenerator
for bothIAtomContainer
andIReaction
content.ReactionRenderer
(List<IGenerator<IAtomContainer>> generators, IFontManager fontManager) A renderer that generates diagrams using the specified generators and manages fonts with the supplied font manager.ReactionRenderer
(RendererModel rendererModel, List<IGenerator<IAtomContainer>> generators, IFontManager fontManager) -
Method Summary
Modifier and TypeMethodDescriptioncalculateDiagramBounds
(IReaction reaction) Given aIChemObject
, calculates the bounding rectangle in screen space.double
calculateScaleForBondLength
(double modelBondLength) Given a bond length for a model, calculate the scale that will transform this length to the on screen bond length in RendererModel.generateDiagram
(IReaction reaction) The main method of the renderer, that uses each of the generators to create a different set ofIRenderingElement
s grouped together into a tree.Returns aList
ofIGenerator
s for this renderer.paint
(IReaction reaction, IDrawVisitor drawVisitor) Paint an IChemObject.void
paint
(IReaction reaction, IDrawVisitor drawVisitor, Rectangle2D bounds, boolean resetCenter) Paint a reaction.void
Set the scale for an IReaction.void
Setup the transformations necessary to draw this Reaction.Methods inherited from class org.openscience.cdk.renderer.AbstractRenderer
calculateScreenBounds, convertToDiagramBounds, getBounds, getDrawCenter, getModelCenter, getRenderer2DModel, paint, repaint, setDrawCenter, setModelCenter, setup, setupTransformNatural, setupTransformToFit, setZoom, setZoomToFit, shift, shiftDrawCenter, toModelCoordinates, toScreenCoordinates
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
Methods inherited from interface org.openscience.cdk.renderer.IRenderer
getRenderer2DModel, setZoom, shiftDrawCenter, toModelCoordinates, toScreenCoordinates
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Constructor Details
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ReactionRenderer
A renderer that generates diagrams using the specified generators and manages fonts with the supplied font manager.- Parameters:
generators
- a list of classes that implement the IGenerator interfacefontManager
- a class that manages mappings between zoom and font sizes
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ReactionRenderer
public ReactionRenderer(RendererModel rendererModel, List<IGenerator<IAtomContainer>> generators, IFontManager fontManager) -
ReactionRenderer
public ReactionRenderer(List<IGenerator<IAtomContainer>> generators, List<IGenerator<IReaction>> reactionGenerators, IFontManager fontManager) A renderer that drawsIReaction
s with the passedIGenerator
for bothIAtomContainer
andIReaction
content.- Parameters:
generators
- a list of classes that implement theIGenerator
interfacereactionGenerators
- a list ofIGenerator
related toIReaction
sfontManager
- a class that manages mappings between zoom and font sizes
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Method Details
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setup
Setup the transformations necessary to draw this Reaction. -
setScale
Set the scale for an IReaction. It calculates the average bond length of the model and calculates the multiplication factor to transform this to the bond length that is set in the RendererModel. -
paint
Paint an IChemObject. -
paint
public void paint(IReaction reaction, IDrawVisitor drawVisitor, Rectangle2D bounds, boolean resetCenter) Paint a reaction. -
calculateDiagramBounds
Given aIChemObject
, calculates the bounding rectangle in screen space.- Specified by:
calculateDiagramBounds
in interfaceIRenderer<IReaction>
- Parameters:
reaction
- theIChemObject
to draw.- Returns:
- a rectangle in screen space.
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calculateScaleForBondLength
public double calculateScaleForBondLength(double modelBondLength) Given a bond length for a model, calculate the scale that will transform this length to the on screen bond length in RendererModel.- Specified by:
calculateScaleForBondLength
in classAbstractRenderer<IReaction>
- Parameters:
modelBondLength
- the wanted model bond length in screen length- Returns:
- returns the scale that causes the drawn bond lengths in pixels to match the given model bond length
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generateDiagram
The main method of the renderer, that uses each of the generators to create a different set ofIRenderingElement
s grouped together into a tree.- Specified by:
generateDiagram
in interfaceIRenderer<IReaction>
- Overrides:
generateDiagram
in classAbstractRenderer<IReaction>
- Parameters:
reaction
- the object of type T to draw- Returns:
- the diagram as a tree of
IRenderingElement
s
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getGenerators
Returns aList
ofIGenerator
s for this renderer.- Specified by:
getGenerators
in interfaceIRenderer<IReaction>
- Returns:
- the list of generators for this renderer.
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