Package org.openscience.cdk.reaction

Class ReactionChain

java.lang.Object

org.openscience.cdk.ChemObject

org.openscience.cdk.ReactionSet

org.openscience.cdk.reaction.ReactionChain

All Implemented Interfaces:

Serializable, Cloneable, ICDKObject, IChemObject, IChemObjectListener, IReactionSet

public class ReactionChain
extends ReactionSet

Classes that extends the definition of reaction to a chain reaction. This is designed to contains a set of reactions which are lineal linked as chain. That would mean no exist branches or cycles and in this concept you have a start reaction and final reaction. Each reaction is included in a step of the chain.

Author:

miguelrojasch <miguelrojasch@yahoo.es>

See Also:

• Serialized Form

Field Summary

Fields inherited from interface org.openscience.cdk.interfaces.IChemObject

ALIPHATIC, AROMATIC, CONJUGATED, HYDROGEN_BOND_ACCEPTOR, HYDROGEN_BOND_DONOR, IN_RING, MAPPED, MARKUSH, NOT_IN_RING, PLACED, REACTIVE_CENTER, SINGLE_OR_DOUBLE, TYPEABLE, VISITED

Constructor Summary

Constructors

Constructor	Description
ReactionChain()

Method Summary

Modifier and Type	Method	Description
void	addReaction(IReaction reaction, int position)	Added a IReaction for this chain in position.
IReaction	getReaction(int position)	Get the reaction of this chain reaction object at the position.
int	getReactionStep(IReaction reaction)	Get the position of the reaction into this chain reaction object.

Methods inherited from class org.openscience.cdk.ReactionSet

addReaction, clone, getReactionCount, isEmpty, reactions, removeAllReactions, removeReaction, removeReaction, stateChanged, toString

Methods inherited from class org.openscience.cdk.ChemObject

addListener, addProperties, clear, compare, flags, getBuilder, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, is, notifyChanged, notifyChanged, removeListener, removeProperty, set, setFlag, setFlags, setID, setNotification, setProperties, setProperty, shallowCopy

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject

getBuilder

Methods inherited from interface org.openscience.cdk.interfaces.IChemObject

addListener, addProperties, clear, flags, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, is, notifyChanged, notifyChanged, removeListener, removeProperty, set, setFlag, setFlags, setID, setNotification, setProperties, setProperty

Constructor Details

ReactionChain

public ReactionChain()

Method Details

addReaction

public void addReaction(IReaction reaction,
 int position)

Added a IReaction for this chain in position.

Parameters:

reaction - The IReaction

position - The position in this chain where the reaction is to be inserted

getReactionStep

public int getReactionStep(IReaction reaction)

Get the position of the reaction into this chain reaction object.

Parameters:

reaction - The IReaction to look at

Returns:

The position of the IReaction in this chain

getReaction

public IReaction getReaction(int position)

Get the reaction of this chain reaction object at the position.

Specified by:

getReaction in interface IReactionSet

Overrides:

getReaction in class ReactionSet

Parameters:

position - The position of the IReaction in this chain to look for

Returns:

Reaction The IReaction to look at