Uses of Interface
org.openscience.cdk.interfaces.ILonePair

Packages that use ILonePair

Package	Description
org.openscience.cdk
org.openscience.cdk.debug
org.openscience.cdk.interfaces
org.openscience.cdk.isomorphism.matchers
org.openscience.cdk.silent

Uses of ILonePair in org.openscience.cdk

Classes in org.openscience.cdk that implement ILonePair

Modifier and Type	Class	Description
class	LonePair	A LonePair is an orbital primarily located with one Atom, containing two electrons.

Fields in org.openscience.cdk declared as ILonePair

Modifier and Type	Field	Description
protected ILonePair[]	AtomContainer.lonePairs	Internal array of lone pairs.

Methods in org.openscience.cdk that return ILonePair

Modifier and Type	Method	Description
ILonePair	AtomContainer.getLonePair(int idx)	Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx < IAtomContainer.getLonePairCount().
ILonePair	AtomContainer.removeLonePair(int position)	Removes the lone pair at the given position from the AtomContainer.

Methods in org.openscience.cdk that return types with arguments of type ILonePair

Modifier and Type	Method	Description
List<ILonePair>	AtomContainer.getConnectedLonePairsList(IAtom atom)	Returns the lone pairs connected connected to the specified atom.
Iterable<ILonePair>	AtomContainer.lonePairs()	Returns an Iterable for looping over all lone pairs in this container.

Methods in org.openscience.cdk with parameters of type ILonePair

Modifier and Type	Method	Description
void	AtomContainer.addLonePair(ILonePair lonePair)	Adds a lone pair to this AtomContainer.
boolean	AtomContainer.contains(ILonePair lonePair)	True, if the AtomContainer contains the given LonePair object.
int	AtomContainer.getLonePairNumber(ILonePair lonePair)	Returns the position of a given lone pair in the lone pair array.
int	AtomContainer.indexOf(ILonePair pair)	Access the storage index of a long pair.
void	AtomContainer.removeLonePair(ILonePair lonePair)	Removes the lone pair from the AtomContainer.

Uses of ILonePair in org.openscience.cdk.debug

Classes in org.openscience.cdk.debug that implement ILonePair

Modifier and Type	Class	Description
class	DebugLonePair	Debugging data class.

Methods in org.openscience.cdk.debug that return ILonePair

Modifier and Type	Method	Description
ILonePair	DebugAminoAcid.getLonePair(int idx)	Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx < IAtomContainer.getLonePairCount().
ILonePair	DebugAtomContainer.getLonePair(int idx)	Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx < IAtomContainer.getLonePairCount().
ILonePair	DebugBioPolymer.getLonePair(int idx)	Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx < IAtomContainer.getLonePairCount().
ILonePair	DebugCrystal.getLonePair(int idx)	Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx < IAtomContainer.getLonePairCount().
ILonePair	DebugMonomer.getLonePair(int idx)	Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx < IAtomContainer.getLonePairCount().
ILonePair	DebugPolymer.getLonePair(int idx)	Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx < IAtomContainer.getLonePairCount().
ILonePair	DebugRing.getLonePair(int idx)	Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx < IAtomContainer.getLonePairCount().
ILonePair	DebugStrand.getLonePair(int idx)	Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx < IAtomContainer.getLonePairCount().
ILonePair	DebugAminoAcid.removeLonePair(int pos)	Removes the lone pair at the given position from the AtomContainer.
ILonePair	DebugAtomContainer.removeLonePair(int pos)	Removes the lone pair at the given position from the AtomContainer.
ILonePair	DebugBioPolymer.removeLonePair(int pos)	Removes the lone pair at the given position from the AtomContainer.
ILonePair	DebugCrystal.removeLonePair(int pos)	Removes the lone pair at the given position from the AtomContainer.
ILonePair	DebugMonomer.removeLonePair(int pos)	Removes the lone pair at the given position from the AtomContainer.
ILonePair	DebugPolymer.removeLonePair(int pos)	Removes the lone pair at the given position from the AtomContainer.
ILonePair	DebugRing.removeLonePair(int pos)	Removes the lone pair at the given position from the AtomContainer.
ILonePair	DebugStrand.removeLonePair(int pos)	Removes the lone pair at the given position from the AtomContainer.

Methods in org.openscience.cdk.debug that return types with arguments of type ILonePair

Modifier and Type	Method	Description
List<ILonePair>	DebugAminoAcid.getConnectedLonePairsList(IAtom atom)	Returns the lone pairs connected connected to the specified atom.
List<ILonePair>	DebugAtomContainer.getConnectedLonePairsList(IAtom atom)	Returns the lone pairs connected connected to the specified atom.
List<ILonePair>	DebugBioPolymer.getConnectedLonePairsList(IAtom atom)	Returns the lone pairs connected connected to the specified atom.
List<ILonePair>	DebugCrystal.getConnectedLonePairsList(IAtom atom)	Returns the lone pairs connected connected to the specified atom.
List<ILonePair>	DebugMonomer.getConnectedLonePairsList(IAtom atom)	Returns the lone pairs connected connected to the specified atom.
List<ILonePair>	DebugPolymer.getConnectedLonePairsList(IAtom atom)	Returns the lone pairs connected connected to the specified atom.
List<ILonePair>	DebugRing.getConnectedLonePairsList(IAtom atom)	Returns the lone pairs connected connected to the specified atom.
List<ILonePair>	DebugStrand.getConnectedLonePairsList(IAtom atom)	Returns the lone pairs connected connected to the specified atom.
Iterable<ILonePair>	DebugAminoAcid.lonePairs()	Returns an Iterable for looping over all lone pairs in this container.
Iterable<ILonePair>	DebugAtomContainer.lonePairs()	Returns an Iterable for looping over all lone pairs in this container.
Iterable<ILonePair>	DebugBioPolymer.lonePairs()	Returns an Iterable for looping over all lone pairs in this container.
Iterable<ILonePair>	DebugCrystal.lonePairs()	Returns an Iterable for looping over all lone pairs in this container.
Iterable<ILonePair>	DebugMonomer.lonePairs()	Returns an Iterable for looping over all lone pairs in this container.
Iterable<ILonePair>	DebugPolymer.lonePairs()	Returns an Iterable for looping over all lone pairs in this container.
Iterable<ILonePair>	DebugRing.lonePairs()	Returns an Iterable for looping over all lone pairs in this container.
Iterable<ILonePair>	DebugStrand.lonePairs()	Returns an Iterable for looping over all lone pairs in this container.

Methods in org.openscience.cdk.debug with parameters of type ILonePair

Modifier and Type	Method	Description
void	DebugAminoAcid.addLonePair(ILonePair ec)	Adds a lone pair to this AtomContainer.
void	DebugAtomContainer.addLonePair(ILonePair ec)	Adds a lone pair to this AtomContainer.
void	DebugBioPolymer.addLonePair(ILonePair ec)	Adds a lone pair to this AtomContainer.
void	DebugCrystal.addLonePair(ILonePair ec)	Adds a lone pair to this AtomContainer.
void	DebugMonomer.addLonePair(ILonePair ec)	Adds a lone pair to this AtomContainer.
void	DebugPolymer.addLonePair(ILonePair ec)	Adds a lone pair to this AtomContainer.
void	DebugRing.addLonePair(ILonePair ec)	Adds a lone pair to this AtomContainer.
void	DebugStrand.addLonePair(ILonePair ec)	Adds a lone pair to this AtomContainer.
boolean	DebugAminoAcid.contains(ILonePair ec)	True, if the AtomContainer contains the given LonePair object.
boolean	DebugAtomContainer.contains(ILonePair ec)	True, if the AtomContainer contains the given LonePair object.
boolean	DebugBioPolymer.contains(ILonePair ec)	True, if the AtomContainer contains the given LonePair object.
boolean	DebugCrystal.contains(ILonePair ec)	True, if the AtomContainer contains the given LonePair object.
boolean	DebugMonomer.contains(ILonePair ec)	True, if the AtomContainer contains the given LonePair object.
boolean	DebugPolymer.contains(ILonePair ec)	True, if the AtomContainer contains the given LonePair object.
boolean	DebugRing.contains(ILonePair ec)	True, if the AtomContainer contains the given LonePair object.
boolean	DebugStrand.contains(ILonePair ec)	True, if the AtomContainer contains the given LonePair object.
int	DebugAminoAcid.getLonePairNumber(ILonePair bond)	Returns the position of a given lone pair in the lone pair array.
int	DebugBioPolymer.getLonePairNumber(ILonePair bond)	Returns the position of a given lone pair in the lone pair array.
int	DebugCrystal.getLonePairNumber(ILonePair bond)	Returns the position of a given lone pair in the lone pair array.
int	DebugMonomer.getLonePairNumber(ILonePair bond)	Returns the position of a given lone pair in the lone pair array.
int	DebugPolymer.getLonePairNumber(ILonePair bond)	Returns the position of a given lone pair in the lone pair array.
int	DebugRing.getLonePairNumber(ILonePair bond)	Returns the position of a given lone pair in the lone pair array.
int	DebugStrand.getLonePairNumber(ILonePair bond)	Returns the position of a given lone pair in the lone pair array.
int	DebugAtomContainer.indexOf(ILonePair pair)	Access the storage index of a long pair.
void	DebugAminoAcid.removeLonePair(ILonePair ec)	Removes the lone pair from the AtomContainer.
void	DebugAtomContainer.removeLonePair(ILonePair ec)	Removes the lone pair from the AtomContainer.
void	DebugBioPolymer.removeLonePair(ILonePair ec)	Removes the lone pair from the AtomContainer.
void	DebugCrystal.removeLonePair(ILonePair ec)	Removes the lone pair from the AtomContainer.
void	DebugMonomer.removeLonePair(ILonePair ec)	Removes the lone pair from the AtomContainer.
void	DebugPolymer.removeLonePair(ILonePair ec)	Removes the lone pair from the AtomContainer.
void	DebugRing.removeLonePair(ILonePair ec)	Removes the lone pair from the AtomContainer.
void	DebugStrand.removeLonePair(ILonePair ec)	Removes the lone pair from the AtomContainer.

Uses of ILonePair in org.openscience.cdk.interfaces

Methods in org.openscience.cdk.interfaces that return ILonePair

Modifier and Type	Method	Description
ILonePair	IAtomContainer.getLonePair(int idx)	Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx < IAtomContainer.getLonePairCount().
ILonePair	IAtomContainer.removeLonePair(int position)	Removes the lone pair at the given position from the AtomContainer.

Methods in org.openscience.cdk.interfaces that return types with arguments of type ILonePair

Modifier and Type	Method	Description
List<ILonePair>	IAtomContainer.getConnectedLonePairsList(IAtom atom)	Returns the lone pairs connected connected to the specified atom.
Iterable<ILonePair>	IAtomContainer.lonePairs()	Returns an Iterable for looping over all lone pairs in this container.

Methods in org.openscience.cdk.interfaces with parameters of type ILonePair

Modifier and Type	Method	Description
void	IAtomContainer.addLonePair(ILonePair lonePair)	Adds a lone pair to this AtomContainer.
boolean	IAtomContainer.contains(ILonePair lonePair)	True, if the AtomContainer contains the given LonePair object.
int	IAtomContainer.getLonePairNumber(ILonePair lonePair)	Deprecated. use IAtomContainer.indexOf(ILonePair)
int	IAtomContainer.indexOf(ILonePair pair)	Access the storage index of a long pair.
void	IAtomContainer.removeLonePair(ILonePair lonePair)	Removes the lone pair from the AtomContainer.

Uses of ILonePair in org.openscience.cdk.isomorphism.matchers

Fields in org.openscience.cdk.isomorphism.matchers declared as ILonePair

Modifier and Type	Field	Description
protected ILonePair[]	QueryAtomContainer.lonePairs	Internal array of lone pairs.

Methods in org.openscience.cdk.isomorphism.matchers that return ILonePair

Modifier and Type	Method	Description
ILonePair	QueryAtomContainer.getLonePair(int idx)	Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx < IAtomContainer.getLonePairCount().
ILonePair	QueryAtomContainer.removeLonePair(int position)	Removes the lone pair at the given position from the AtomContainer.

Methods in org.openscience.cdk.isomorphism.matchers that return types with arguments of type ILonePair

Modifier and Type	Method	Description
List<ILonePair>	QueryAtomContainer.getConnectedLonePairsList(IAtom atom)	Returns the array of lone pairs connected to an atom.
Iterable<ILonePair>	QueryAtomContainer.lonePairs()	Returns an Iterable for looping over all lone pairs in this container.

Methods in org.openscience.cdk.isomorphism.matchers with parameters of type ILonePair

Modifier and Type	Method	Description
void	QueryAtomContainer.addLonePair(ILonePair lonePair)	Adds a lone pair to this AtomContainer.
boolean	QueryAtomContainer.contains(ILonePair lonePair)	True, if the AtomContainer contains the given LonePair object.
int	QueryAtomContainer.getLonePairNumber(ILonePair lonePair)	Returns the position of a given lone pair in the lone pair array.
int	QueryAtomContainer.indexOf(ILonePair pair)
void	QueryAtomContainer.removeLonePair(ILonePair lonePair)	Removes the lone pair from the AtomContainer.

Uses of ILonePair in org.openscience.cdk.silent

Classes in org.openscience.cdk.silent that implement ILonePair

Modifier and Type	Class	Description
class	LonePair	A LonePair is an orbital primarily located with one Atom, containing two electrons.

Fields in org.openscience.cdk.silent declared as ILonePair

Modifier and Type	Field	Description
protected ILonePair[]	AtomContainer.lonePairs	Internal array of lone pairs.

Methods in org.openscience.cdk.silent that return ILonePair

Modifier and Type	Method	Description
ILonePair	AtomContainer.getLonePair(int idx)	Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx < IAtomContainer.getLonePairCount().
ILonePair	AtomContainer.removeLonePair(int position)	Removes the lone pair at the given position from the AtomContainer.

Methods in org.openscience.cdk.silent that return types with arguments of type ILonePair

Modifier and Type	Method	Description
List<ILonePair>	AtomContainer.getConnectedLonePairsList(IAtom atom)	Returns the lone pairs connected connected to the specified atom.
Iterable<ILonePair>	AtomContainer.lonePairs()	Returns an Iterable for looping over all lone pairs in this container.

Methods in org.openscience.cdk.silent with parameters of type ILonePair

Modifier and Type	Method	Description
void	AtomContainer.addLonePair(ILonePair lonePair)	Adds a lone pair to this AtomContainer.
boolean	AtomContainer.contains(ILonePair lonePair)	True, if the AtomContainer contains the given LonePair object.
int	AtomContainer.getLonePairNumber(ILonePair lonePair)	Returns the position of a given lone pair in the lone pair array.
int	AtomContainer.indexOf(ILonePair pair)	Access the storage index of a long pair.
void	AtomContainer.removeLonePair(ILonePair lonePair)	Removes the lone pair from the AtomContainer.