Uses of Interface
org.openscience.cdk.interfaces.ILonePair
Packages that use ILonePair
Package
Description
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Uses of ILonePair in org.openscience.cdk
Classes in org.openscience.cdk that implement ILonePairModifier and TypeClassDescriptionclass
A LonePair is an orbital primarily located with one Atom, containing two electrons.Fields in org.openscience.cdk declared as ILonePairModifier and TypeFieldDescriptionprotected ILonePair[]
AtomContainer.lonePairs
Internal array of lone pairs.Methods in org.openscience.cdk that return ILonePairModifier and TypeMethodDescriptionAtomContainer.getLonePair
(int idx) Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getLonePairCount()
.AtomContainer.removeLonePair
(int position) Removes the lone pair at the given position from the AtomContainer.Methods in org.openscience.cdk that return types with arguments of type ILonePairModifier and TypeMethodDescriptionAtomContainer.getConnectedLonePairsList
(IAtom atom) Returns the lone pairs connected connected to the specified atom.AtomContainer.lonePairs()
Returns an Iterable for looping over all lone pairs in this container.Methods in org.openscience.cdk with parameters of type ILonePairModifier and TypeMethodDescriptionvoid
AtomContainer.addLonePair
(ILonePair lonePair) Adds a lone pair to this AtomContainer.boolean
True, if the AtomContainer contains the given LonePair object.int
AtomContainer.getLonePairNumber
(ILonePair lonePair) Returns the position of a given lone pair in the lone pair array.int
Access the storage index of a long pair.void
AtomContainer.removeLonePair
(ILonePair lonePair) Removes the lone pair from the AtomContainer. -
Uses of ILonePair in org.openscience.cdk.debug
Classes in org.openscience.cdk.debug that implement ILonePairMethods in org.openscience.cdk.debug that return ILonePairModifier and TypeMethodDescriptionDebugAminoAcid.getLonePair
(int idx) Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getLonePairCount()
.DebugAtomContainer.getLonePair
(int idx) Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getLonePairCount()
.DebugBioPolymer.getLonePair
(int idx) Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getLonePairCount()
.DebugCrystal.getLonePair
(int idx) Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getLonePairCount()
.DebugMonomer.getLonePair
(int idx) Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getLonePairCount()
.DebugPolymer.getLonePair
(int idx) Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getLonePairCount()
.DebugRing.getLonePair
(int idx) Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getLonePairCount()
.DebugStrand.getLonePair
(int idx) Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getLonePairCount()
.DebugAminoAcid.removeLonePair
(int pos) Removes the lone pair at the given position from the AtomContainer.DebugAtomContainer.removeLonePair
(int pos) Removes the lone pair at the given position from the AtomContainer.DebugBioPolymer.removeLonePair
(int pos) Removes the lone pair at the given position from the AtomContainer.DebugCrystal.removeLonePair
(int pos) Removes the lone pair at the given position from the AtomContainer.DebugMonomer.removeLonePair
(int pos) Removes the lone pair at the given position from the AtomContainer.DebugPolymer.removeLonePair
(int pos) Removes the lone pair at the given position from the AtomContainer.DebugRing.removeLonePair
(int pos) Removes the lone pair at the given position from the AtomContainer.DebugStrand.removeLonePair
(int pos) Removes the lone pair at the given position from the AtomContainer.Methods in org.openscience.cdk.debug that return types with arguments of type ILonePairModifier and TypeMethodDescriptionDebugAminoAcid.getConnectedLonePairsList
(IAtom atom) Returns the lone pairs connected connected to the specified atom.DebugAtomContainer.getConnectedLonePairsList
(IAtom atom) Returns the lone pairs connected connected to the specified atom.DebugBioPolymer.getConnectedLonePairsList
(IAtom atom) Returns the lone pairs connected connected to the specified atom.DebugCrystal.getConnectedLonePairsList
(IAtom atom) Returns the lone pairs connected connected to the specified atom.DebugMonomer.getConnectedLonePairsList
(IAtom atom) Returns the lone pairs connected connected to the specified atom.DebugPolymer.getConnectedLonePairsList
(IAtom atom) Returns the lone pairs connected connected to the specified atom.DebugRing.getConnectedLonePairsList
(IAtom atom) Returns the lone pairs connected connected to the specified atom.DebugStrand.getConnectedLonePairsList
(IAtom atom) Returns the lone pairs connected connected to the specified atom.DebugAminoAcid.lonePairs()
Returns an Iterable for looping over all lone pairs in this container.DebugAtomContainer.lonePairs()
Returns an Iterable for looping over all lone pairs in this container.DebugBioPolymer.lonePairs()
Returns an Iterable for looping over all lone pairs in this container.DebugCrystal.lonePairs()
Returns an Iterable for looping over all lone pairs in this container.DebugMonomer.lonePairs()
Returns an Iterable for looping over all lone pairs in this container.DebugPolymer.lonePairs()
Returns an Iterable for looping over all lone pairs in this container.DebugRing.lonePairs()
Returns an Iterable for looping over all lone pairs in this container.DebugStrand.lonePairs()
Returns an Iterable for looping over all lone pairs in this container.Methods in org.openscience.cdk.debug with parameters of type ILonePairModifier and TypeMethodDescriptionvoid
DebugAminoAcid.addLonePair
(ILonePair ec) Adds a lone pair to this AtomContainer.void
DebugAtomContainer.addLonePair
(ILonePair ec) Adds a lone pair to this AtomContainer.void
DebugBioPolymer.addLonePair
(ILonePair ec) Adds a lone pair to this AtomContainer.void
DebugCrystal.addLonePair
(ILonePair ec) Adds a lone pair to this AtomContainer.void
DebugMonomer.addLonePair
(ILonePair ec) Adds a lone pair to this AtomContainer.void
DebugPolymer.addLonePair
(ILonePair ec) Adds a lone pair to this AtomContainer.void
DebugRing.addLonePair
(ILonePair ec) Adds a lone pair to this AtomContainer.void
DebugStrand.addLonePair
(ILonePair ec) Adds a lone pair to this AtomContainer.boolean
True, if the AtomContainer contains the given LonePair object.boolean
True, if the AtomContainer contains the given LonePair object.boolean
True, if the AtomContainer contains the given LonePair object.boolean
True, if the AtomContainer contains the given LonePair object.boolean
True, if the AtomContainer contains the given LonePair object.boolean
True, if the AtomContainer contains the given LonePair object.boolean
True, if the AtomContainer contains the given LonePair object.boolean
True, if the AtomContainer contains the given LonePair object.int
DebugAminoAcid.getLonePairNumber
(ILonePair bond) Returns the position of a given lone pair in the lone pair array.int
DebugBioPolymer.getLonePairNumber
(ILonePair bond) Returns the position of a given lone pair in the lone pair array.int
DebugCrystal.getLonePairNumber
(ILonePair bond) Returns the position of a given lone pair in the lone pair array.int
DebugMonomer.getLonePairNumber
(ILonePair bond) Returns the position of a given lone pair in the lone pair array.int
DebugPolymer.getLonePairNumber
(ILonePair bond) Returns the position of a given lone pair in the lone pair array.int
DebugRing.getLonePairNumber
(ILonePair bond) Returns the position of a given lone pair in the lone pair array.int
DebugStrand.getLonePairNumber
(ILonePair bond) Returns the position of a given lone pair in the lone pair array.int
Access the storage index of a long pair.void
DebugAminoAcid.removeLonePair
(ILonePair ec) Removes the lone pair from the AtomContainer.void
DebugAtomContainer.removeLonePair
(ILonePair ec) Removes the lone pair from the AtomContainer.void
DebugBioPolymer.removeLonePair
(ILonePair ec) Removes the lone pair from the AtomContainer.void
DebugCrystal.removeLonePair
(ILonePair ec) Removes the lone pair from the AtomContainer.void
DebugMonomer.removeLonePair
(ILonePair ec) Removes the lone pair from the AtomContainer.void
DebugPolymer.removeLonePair
(ILonePair ec) Removes the lone pair from the AtomContainer.void
DebugRing.removeLonePair
(ILonePair ec) Removes the lone pair from the AtomContainer.void
DebugStrand.removeLonePair
(ILonePair ec) Removes the lone pair from the AtomContainer. -
Uses of ILonePair in org.openscience.cdk.interfaces
Methods in org.openscience.cdk.interfaces that return ILonePairModifier and TypeMethodDescriptionIAtomContainer.getLonePair
(int idx) Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getLonePairCount()
.IAtomContainer.removeLonePair
(int position) Removes the lone pair at the given position from the AtomContainer.Methods in org.openscience.cdk.interfaces that return types with arguments of type ILonePairModifier and TypeMethodDescriptionIAtomContainer.getConnectedLonePairsList
(IAtom atom) Returns the lone pairs connected connected to the specified atom.IAtomContainer.lonePairs()
Returns an Iterable for looping over all lone pairs in this container.Methods in org.openscience.cdk.interfaces with parameters of type ILonePairModifier and TypeMethodDescriptionvoid
IAtomContainer.addLonePair
(ILonePair lonePair) Adds a lone pair to this AtomContainer.boolean
True, if the AtomContainer contains the given LonePair object.int
IAtomContainer.getLonePairNumber
(ILonePair lonePair) Deprecated.int
Access the storage index of a long pair.void
IAtomContainer.removeLonePair
(ILonePair lonePair) Removes the lone pair from the AtomContainer. -
Uses of ILonePair in org.openscience.cdk.isomorphism.matchers
Fields in org.openscience.cdk.isomorphism.matchers declared as ILonePairModifier and TypeFieldDescriptionprotected ILonePair[]
QueryAtomContainer.lonePairs
Internal array of lone pairs.Methods in org.openscience.cdk.isomorphism.matchers that return ILonePairModifier and TypeMethodDescriptionQueryAtomContainer.getLonePair
(int idx) Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getLonePairCount()
.QueryAtomContainer.removeLonePair
(int position) Removes the lone pair at the given position from the AtomContainer.Methods in org.openscience.cdk.isomorphism.matchers that return types with arguments of type ILonePairModifier and TypeMethodDescriptionQueryAtomContainer.getConnectedLonePairsList
(IAtom atom) Returns the array of lone pairs connected to an atom.QueryAtomContainer.lonePairs()
Returns an Iterable for looping over all lone pairs in this container.Methods in org.openscience.cdk.isomorphism.matchers with parameters of type ILonePairModifier and TypeMethodDescriptionvoid
QueryAtomContainer.addLonePair
(ILonePair lonePair) Adds a lone pair to this AtomContainer.boolean
True, if the AtomContainer contains the given LonePair object.int
QueryAtomContainer.getLonePairNumber
(ILonePair lonePair) Returns the position of a given lone pair in the lone pair array.int
void
QueryAtomContainer.removeLonePair
(ILonePair lonePair) Removes the lone pair from the AtomContainer. -
Uses of ILonePair in org.openscience.cdk.silent
Classes in org.openscience.cdk.silent that implement ILonePairModifier and TypeClassDescriptionclass
A LonePair is an orbital primarily located with one Atom, containing two electrons.Fields in org.openscience.cdk.silent declared as ILonePairModifier and TypeFieldDescriptionprotected ILonePair[]
AtomContainer.lonePairs
Internal array of lone pairs.Methods in org.openscience.cdk.silent that return ILonePairModifier and TypeMethodDescriptionAtomContainer.getLonePair
(int idx) Get the lone pair at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getLonePairCount()
.AtomContainer.removeLonePair
(int position) Removes the lone pair at the given position from the AtomContainer.Methods in org.openscience.cdk.silent that return types with arguments of type ILonePairModifier and TypeMethodDescriptionAtomContainer.getConnectedLonePairsList
(IAtom atom) Returns the lone pairs connected connected to the specified atom.AtomContainer.lonePairs()
Returns an Iterable for looping over all lone pairs in this container.Methods in org.openscience.cdk.silent with parameters of type ILonePairModifier and TypeMethodDescriptionvoid
AtomContainer.addLonePair
(ILonePair lonePair) Adds a lone pair to this AtomContainer.boolean
True, if the AtomContainer contains the given LonePair object.int
AtomContainer.getLonePairNumber
(ILonePair lonePair) Returns the position of a given lone pair in the lone pair array.int
Access the storage index of a long pair.void
AtomContainer.removeLonePair
(ILonePair lonePair) Removes the lone pair from the AtomContainer.
IAtomContainer.indexOf(ILonePair)