Package org.openscience.cdk.config

Class OWLBasedAtomTypeConfigurator

java.lang.Object

org.openscience.cdk.config.OWLBasedAtomTypeConfigurator

All Implemented Interfaces:

IAtomTypeConfigurator

public class OWLBasedAtomTypeConfigurator
extends Object
implements IAtomTypeConfigurator

AtomType resource that reads the atom type configuration from an OWL file.

Source code:

main

Belongs to CDK module:

core

Constructor Summary

Constructors

Constructor	Description
OWLBasedAtomTypeConfigurator()

Method Summary

Modifier and Type	Method	Description
List<IAtomType>	readAtomTypes(IChemObjectBuilder builder)	Reads the atom types from the OWL based atom type list.
void	setInputStream(InputStream ins)	Sets the file containing the configuration data.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

OWLBasedAtomTypeConfigurator

public OWLBasedAtomTypeConfigurator()

Method Details

setInputStream

public void setInputStream(InputStream ins)

Sets the file containing the configuration data.

Specified by:

setInputStream in interface IAtomTypeConfigurator

Parameters:

ins - InputStream from which the atom type definitions are to be read

readAtomTypes

public List<IAtomType> readAtomTypes(IChemObjectBuilder builder)
                              throws IOException

Reads the atom types from the OWL based atom type list.

Specified by:

readAtomTypes in interface IAtomTypeConfigurator

Parameters:

builder - IChemObjectBuilder used to construct the IAtomType's.

Returns:

A List with read IAtomType's.

Throws:

IOException - when a problem occurred with reading from the InputStream