org.openscience.cdk.smsd.algorithm.matchers

Class DefaultVFBondMatcher

java.lang.Object

org.openscience.cdk.smsd.algorithm.matchers.DefaultVFBondMatcher

All Implemented Interfaces:

VFBondMatcher

Deprecated.

This class is part of SMSD and either duplicates functionality elsewhere in the CDK or provides public access to internal implementation details. SMSD has been deprecated from the CDK with a newer, more recent version of SMSD is available at http://github.com/asad/smsd.

@Deprecated
public class DefaultVFBondMatcher
extends Object
implements VFBondMatcher

Checks if a bond is matching between query and target molecules.

Author:

Syed Asad Rahman <asad@ebi.ac.uk>

Source code:

master

Belongs to CDK module:

smsd

Constructor Summary

Constructors

Constructor and Description
DefaultVFBondMatcher() Deprecated. Constructor
DefaultVFBondMatcher(IAtomContainer queryMol, IBond queryBond, boolean shouldMatchBonds) Deprecated. Constructor
DefaultVFBondMatcher(IQueryBond queryBond) Deprecated. Constructor

Method Summary

Modifier and Type	Method and Description
boolean	isBondMatchFlag() Deprecated.
boolean	matches(TargetProperties targetConatiner, IBond targetBond) Deprecated.
void	setBondMatchFlag(boolean shouldMatchBonds) Deprecated.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DefaultVFBondMatcher

public DefaultVFBondMatcher()

Deprecated.

Constructor

DefaultVFBondMatcher

public DefaultVFBondMatcher(IAtomContainer queryMol,
                            IBond queryBond,
                            boolean shouldMatchBonds)

Deprecated.

Constructor

Parameters:

queryMol - query Molecule

queryBond - query Molecule

shouldMatchBonds - bond match flag

DefaultVFBondMatcher

public DefaultVFBondMatcher(IQueryBond queryBond)

Deprecated.

Constructor

Parameters:

queryBond - query Molecule

Method Detail

matches

public boolean matches(TargetProperties targetConatiner,
                       IBond targetBond)

Deprecated.

Specified by:

matches in interface VFBondMatcher

Parameters:

targetConatiner - target container

targetBond - target bond

Returns:

true if bonds match

isBondMatchFlag

public boolean isBondMatchFlag()

Deprecated.

Returns:

the shouldMatchBonds

setBondMatchFlag

public final void setBondMatchFlag(boolean shouldMatchBonds)

Deprecated.

Parameters:

shouldMatchBonds - the shouldMatchBonds to set