Package | Description |
---|---|
org.openscience.cdk.debug | |
org.openscience.cdk.interfaces | |
org.openscience.cdk.protein.data | |
org.openscience.cdk.silent |
Modifier and Type | Class and Description |
---|---|
class |
DebugPDBAtom
Debugging data class.
|
Modifier and Type | Method and Description |
---|---|
void |
IPDBPolymer.addAtom(IPDBAtom oAtom)
Adds the atom oAtom without specifying a Monomer or a Strand.
|
void |
IPDBPolymer.addAtom(IPDBAtom oAtom,
IMonomer oMonomer,
IStrand oStrand)
Adds the atom to a specified Strand and a specified Monomer.
|
Modifier and Type | Class and Description |
---|---|
class |
PDBAtom
Represents the idea of an atom as used in PDB files.
|
Modifier and Type | Method and Description |
---|---|
void |
PDBPolymer.addAtom(IPDBAtom oAtom)
Adds the atom oAtom without specifying a
IMonomer or a Strand. |
void |
PDBPolymer.addAtom(IPDBAtom oAtom,
IMonomer oMonomer)
Adds the atom oAtom to a specified Monomer.
|
void |
PDBPolymer.addAtom(IPDBAtom oAtom,
IMonomer oMonomer,
IStrand oStrand)
Adds the IPDBAtom oAtom to a specified Monomer of a specified Strand.
|
Modifier and Type | Method and Description |
---|---|
void |
PDBPolymer.addAtom(IPDBAtom oAtom)
Adds the atom oAtom without specifying a
IMonomer or a Strand. |
void |
PDBPolymer.addAtom(IPDBAtom oAtom,
IMonomer oMonomer)
Adds the atom oAtom to a specified Monomer.
|
void |
PDBPolymer.addAtom(IPDBAtom oAtom,
IMonomer oMonomer,
IStrand oStrand)
Adds the IPDBAtom oAtom to a specified Monomer of a specified Strand.
|
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