org.openscience.cdk.libio.cml

Interface ICMLCustomizer

All Known Implementing Classes:

MDMoleculeCustomizer, PDBAtomCustomizer, QSARCustomizer

public interface ICMLCustomizer

Interface for classes that allow the Convertor to be customized for certain features. The idea here is that the CDK build and runtime dependencies for the Convertor are lowered. For example, QSAR descriptor support and PDBAtom support can be written as Customizers.

Author:

egonw

Source code:

master

Belongs to CDK module:

interfaces

Created on:

2005-05-04

Method Summary

Modifier and Type	Method and Description
void	customize(IAtomContainer molecule, Object nodeToAdd) Customized the nodeToAdd for the given Molecule.
void	customize(IAtom atom, Object nodeToAdd) Customized the nodeToAdd for the given Atom.
void	customize(IBond bond, Object nodeToAdd) Customized the nodeToAdd for the given IBond.

Method Detail

customize

void customize(IAtom atom,
               Object nodeToAdd)
        throws Exception

Customized the nodeToAdd for the given Atom.

Parameters:

atom - Atom to base the customization on

nodeToAdd - XOM Element to customize

Throws:

Exception - thrown if nodeToAdd is not an instance of nu.xom.Element

customize

void customize(IBond bond,
               Object nodeToAdd)
        throws Exception

Customized the nodeToAdd for the given IBond.

Parameters:

bond - Bond to base the customization on

nodeToAdd - XOM Element to customize

Throws:

Exception - thrown if nodeToAdd is not an instance of nu.xom.Element

customize

void customize(IAtomContainer molecule,
               Object nodeToAdd)
        throws Exception

Customized the nodeToAdd for the given Molecule.

Parameters:

molecule - Molecule to base the customization on

nodeToAdd - XOM Element to customize

Throws:

Exception - thrown if nodeToAdd is not an instance of nu.xom.Element