Package | Description |
---|---|
org.openscience.cdk.debug | |
org.openscience.cdk.nonotify | |
org.openscience.cdk.protein.data | |
org.openscience.cdk.tools |
Modifier and Type | Class and Description |
---|---|
class |
DebugBioPolymer
Debugging data class.
|
class |
DebugPDBPolymer
Debugging data class.
|
Modifier and Type | Class and Description |
---|---|
class |
NNBioPolymer
Deprecated.
Use the
BioPolymer instead. |
class |
NNPDBPolymer
Deprecated.
Use the
PDBPolymer instead. |
Modifier and Type | Class and Description |
---|---|
class |
PDBPolymer
An entry in the PDB database.
|
Modifier and Type | Method and Description |
---|---|
static BioPolymer |
ProteinBuilderTool.addAminoAcidAtCTerminus(BioPolymer protein,
AminoAcid aaToAdd,
Strand strand,
AminoAcid aaToAddTo)
Builds a protein by connecting a new amino acid at the C-terminus of the
given strand.
|
static BioPolymer |
ProteinBuilderTool.addAminoAcidAtNTerminus(BioPolymer protein,
AminoAcid aaToAdd,
Strand strand,
AminoAcid aaToAddTo)
Builds a protein by connecting a new amino acid at the N-terminus of the
given strand.
|
static BioPolymer |
ProteinBuilderTool.createProtein(String sequence)
Creates a BioPolymer from a sequence of amino acid as identified by a
the sequence of their one letter codes.
|
Modifier and Type | Method and Description |
---|---|
static BioPolymer |
ProteinBuilderTool.addAminoAcidAtCTerminus(BioPolymer protein,
AminoAcid aaToAdd,
Strand strand,
AminoAcid aaToAddTo)
Builds a protein by connecting a new amino acid at the C-terminus of the
given strand.
|
static BioPolymer |
ProteinBuilderTool.addAminoAcidAtNTerminus(BioPolymer protein,
AminoAcid aaToAdd,
Strand strand,
AminoAcid aaToAddTo)
Builds a protein by connecting a new amino acid at the N-terminus of the
given strand.
|