Package org.openscience.cdk.isomorphism.matchers

Class SymbolSetQueryAtom

java.lang.Object
org.openscience.cdk.isomorphism.matchers.QueryChemObject
org.openscience.cdk.isomorphism.matchers.QueryAtom
org.openscience.cdk.isomorphism.matchers.SymbolSetQueryAtom
All Implemented Interfaces:
Cloneable, IAtom, IAtomType, ICDKObject, IChemObject, IElement, IIsotope, IQueryAtom
@Deprecated public class SymbolSetQueryAtom extends QueryAtom implements IQueryAtom
Deprecated.
Use new Expr(Element, 6).and(new Expr(Element, 8)) etc
A QueryAtom that matches all symbols in this container. You may add symbols to this container. This QueryAtom will only give a match if it contains the symbol of the Atom to match (example: add "F", "Cl", "Br", "I" to get a match for the most common halogens).
Author:
kha
See Also:
Source code:
main
Belongs to CDK module:
isomorphism
Created on:
2004-09-16

  • Constructor Details

    • SymbolSetQueryAtom

      public SymbolSetQueryAtom(IChemObjectBuilder builder)
      Deprecated.
      Constructor for the SymbolSetQueryAtom object

  • Method Details

    • setOperator

      public void setOperator(String str)
      Deprecated.

    • matches

      public boolean matches(IAtom atom)
      Deprecated.
      The matches implementation of the QueryAtom interface.
      Specified by:
      matches in interface IQueryAtom
      Overrides:
      matches in class QueryAtom
      Parameters:
      atom - The atom to be matched by this QueryAtom
      Returns:
      true if Atom matched

    • addSymbol

      public void addSymbol(String symbol)
      Deprecated.
      Add a symbol to this QueryAtom
      Parameters:
      symbol - The symbol to add

    • removeSymbol

      public void removeSymbol(String symbol)
      Deprecated.
      Remove a symbol from this QueryAtom
      Parameters:
      symbol - The symbol to remove

    • hasSymbol

      public boolean hasSymbol(String symbol)
      Deprecated.
      Check whether a symbol is already registered
      Parameters:
      symbol - The symbol to check for
      Returns:
      true if symbol already registered

    • getSymbolSet

      public Set<String> getSymbolSet()
      Deprecated.
      Retrieve the Set of symbols
      Returns:
      The symbol Set

    • toString

      public String toString()
      Deprecated.
      The toString method
      Specified by:
      toString in interface IChemObject
      Overrides:
      toString in class Object
      Returns:
      The String representation of this object.

    • clone

      public IAtom clone() throws CloneNotSupportedException
      Deprecated.
      Description copied from interface: IChemObject
      Returns a deep clone of this IChemObject.
      Specified by:
      clone in interface IAtom
      Specified by:
      clone in interface IChemObject
      Overrides:
      clone in class QueryAtom
      Returns:
      Object the clone of this IChemObject.
      Throws:
      CloneNotSupportedException - if the IChemObject cannot be cloned