Package org.openscience.cdk.io.cml

Class JMOLANIMATIONConvention

java.lang.Object

org.openscience.cdk.io.cml.CMLCoreModule

org.openscience.cdk.io.cml.JMOLANIMATIONConvention

All Implemented Interfaces:

ICMLModule

public class JMOLANIMATIONConvention
extends CMLCoreModule

Author:

Egon Willighagen <egonw@sci.kun.nl>

Source code:

main

Belongs to CDK module:

io

Field Summary

Fields inherited from class org.openscience.cdk.io.cml.CMLCoreModule

atomAromaticities, atomCounter, atomCustomProperty, atomDictRefs, atomEnumeration, atomicNumbers, atomParities, bondARef1, bondARef2, bondAromaticity, bondCounter, bondCustomProperty, bondDictRefs, bondElid, bondid, bondStereo, BUILTIN, crystalScalar, curRef, currentAtom, currentBond, currentChars, currentChemFile, currentChemModel, currentChemSequence, CurrentElement, currentMolecule, currentMoleculeSet, currentMonomer, currentReaction, currentReactionSet, currentStrand, DICTREF, elementTitle, elid, elsym, eltitles, exactMasses, formalCharges, formula, formulaCounter, hCounts, inchi, isotope, moleculeCustomProperty, occupancies, order, parityARef1, parityARef2, parityARef3, parityARef4, parityAtomsGiven, parityGiven, partialCharges, spinMultiplicities, stereoGiven, SYSTEMID, unitcellparams, x2, x3, xfract, y2, y3, yfract, z3, zfract

Constructor Summary

Constructors

Constructor	Description
JMOLANIMATIONConvention(IChemFile chemFile)
JMOLANIMATIONConvention(ICMLModule conv)

Method Summary

Modifier and Type	Method	Description
void	characterData(org.openscience.cdk.io.cml.CMLStack xpath, char[] ch, int start, int length)
void	endElement(org.openscience.cdk.io.cml.CMLStack xpath, String uri, String local, String raw)
void	startElement(org.openscience.cdk.io.cml.CMLStack xpath, String uri, String local, String raw, Attributes atts)

Methods inherited from class org.openscience.cdk.io.cml.CMLCoreModule

addArrayElementsTo, endDocument, inherit, newAtomData, newBondData, newCrystalData, newFormulaData, newMolecule, newMoleculeData, notify, returnChemFile, startDocument, storeAtomData, storeBondData, storeData

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

JMOLANIMATIONConvention

public JMOLANIMATIONConvention(IChemFile chemFile)

JMOLANIMATIONConvention

public JMOLANIMATIONConvention(ICMLModule conv)

Method Detail

startElement

public void startElement(org.openscience.cdk.io.cml.CMLStack xpath,
                         String uri,
                         String local,
                         String raw,
                         Attributes atts)

Specified by:

startElement in interface ICMLModule

Overrides:

startElement in class CMLCoreModule

endElement

public void endElement(org.openscience.cdk.io.cml.CMLStack xpath,
                       String uri,
                       String local,
                       String raw)

Specified by:

endElement in interface ICMLModule

Overrides:

endElement in class CMLCoreModule

characterData

public void characterData(org.openscience.cdk.io.cml.CMLStack xpath,
                          char[] ch,
                          int start,
                          int length)

Specified by:

characterData in interface ICMLModule

Overrides:

characterData in class CMLCoreModule