| Class and Description |
|---|
| IAminoAcid
A AminoAcid is Monomer which stores additional amino acid specific
informations, like the N-terminus atom.
|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IAtomType
The base class for atom types.
|
| IAtomType.Hybridization
An enum for the different hybridization states.
|
| IBioPolymer
A BioPolymer is a subclass of a Polymer which is supposed to store
additional informations about the Polymer which are connected to BioPolymers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IBond.Order
A list of permissible bond orders.
|
| IBond.Stereo
Enumeration of possible stereo types of two-atom bonds.
|
| ICDKObject
The base class for all data objects in this CDK.
|
| IChemFile
An
IChemObject containing a number of ChemSequences. |
| IChemModel
An object containing multiple MoleculeSet and
the other lower level concepts like rings, sequences,
fragments, etc.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| IChemObjectChangeEvent
Event fired by CDK IChemObject classes to their registered listeners
in case something changed within them.
|
| IChemObjectListener
Classes implementing this interface must implement this method
such that they react appropriately to changes in the object they
are interested in.
|
| IChemSequence
A sequence of ChemModels, which can, for example, be used to
store the course of a reaction.
|
| ICrystal
Class representing a molecular crystal.
|
| IElectronContainer
Base class for entities containing electrons, like bonds, orbitals, lone-pairs.
|
| IElement
Implements the idea of an element in the periodic table.
|
| IFragmentAtom
Class to represent an IPseudoAtom which embeds an IAtomContainer.
|
| IIsotope
Used to store and retrieve data of a particular isotope.
|
| ILonePair
A LonePair is an orbital primarily located with one Atom, containing
two electrons.
|
| IMapping
Represents a mapping of two atoms.
|
| IMonomer
A Monomer is an AtomContainer which stores additional monomer specific
informations for a group of Atoms.
|
| IPolymer
Subclass of Molecule to store Polymer specific attributes that a Polymer has.
|
| IPseudoAtom
Represents the idea of a non-chemical atom-like entity, like Me,
R, X, Phe, His, etc.
|
| IReaction
Represents the idea of a chemical reaction.
|
| IReaction.Direction
Permissible reaction directions.
|
| IReactionScheme
Classes that implement this interface of a scheme.
|
| IReactionSet
A set of reactions, for example those taking part in a reaction.
|
| IRing
Class representing a ring structure in a molecule.
|
| IRingSet
Maintains a set of Ring objects.
|
| ISingleElectron
A Single Electron is an orbital which is occupied by only one electron.
|
| IStereoElement
Represents the concept of a stereo element in the molecule.
|
| IStrand
A Strand is an AtomContainer which stores additional strand specific
informations for a group of Atoms.
|
| ISubstance
A chemical substance that consists of one or more chemical structures.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IRing
Class representing a ring structure in a molecule.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomType
The base class for atom types.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| IRingSet
Maintains a set of Ring objects.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomType
The base class for atom types.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| IElement
Implements the idea of an element in the periodic table.
|
| IIsotope
Used to store and retrieve data of a particular isotope.
|
| Class and Description |
|---|
| IAtomType
The base class for atom types.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| Class and Description |
|---|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| IIsotope
Used to store and retrieve data of a particular isotope.
|
| Class and Description |
|---|
| IAdductFormula
Class defining an adduct object in a MolecularFormula.
|
| IAminoAcid
A AminoAcid is Monomer which stores additional amino acid specific
informations, like the N-terminus atom.
|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IAtomType
The base class for atom types.
|
| IAtomType.Hybridization
An enum for the different hybridization states.
|
| IBioPolymer
A BioPolymer is a subclass of a Polymer which is supposed to store
additional informations about the Polymer which are connected to BioPolymers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IBond.Order
A list of permissible bond orders.
|
| IBond.Stereo
Enumeration of possible stereo types of two-atom bonds.
|
| ICDKObject
The base class for all data objects in this CDK.
|
| IChemFile
An
IChemObject containing a number of ChemSequences. |
| IChemModel
An object containing multiple MoleculeSet and
the other lower level concepts like rings, sequences,
fragments, etc.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| IChemObjectChangeEvent
Event fired by CDK IChemObject classes to their registered listeners
in case something changed within them.
|
| IChemObjectListener
Classes implementing this interface must implement this method
such that they react appropriately to changes in the object they
are interested in.
|
| IChemSequence
A sequence of ChemModels, which can, for example, be used to
store the course of a reaction.
|
| ICrystal
Class representing a molecular crystal.
|
| IElectronContainer
Base class for entities containing electrons, like bonds, orbitals, lone-pairs.
|
| IElement
Implements the idea of an element in the periodic table.
|
| IFragmentAtom
Class to represent an IPseudoAtom which embeds an IAtomContainer.
|
| IIsotope
Used to store and retrieve data of a particular isotope.
|
| ILonePair
A LonePair is an orbital primarily located with one Atom, containing
two electrons.
|
| IMapping
Represents a mapping of two atoms.
|
| IMolecularFormula
Class defining a molecular formula object.
|
| IMolecularFormulaSet
Class defining a molecular formula object.
|
| IMonomer
A Monomer is an AtomContainer which stores additional monomer specific
informations for a group of Atoms.
|
| IPDBAtom
A PDBAtom is a subclass of a Atom which is supposed to store additional informations about the Atom.
|
| IPDBMonomer
Represents the idea of an protein monomer as found in PDB files.
|
| IPDBPolymer
A PDBPolymer is a subclass of a BioPolymer which is supposed to store
additional informations about the BioPolymer which are connected to BioPolymers.
|
| IPDBStructure
Represents the idea of an chemical structure.
|
| IPolymer
Subclass of Molecule to store Polymer specific attributes that a Polymer has.
|
| IPseudoAtom
Represents the idea of a non-chemical atom-like entity, like Me,
R, X, Phe, His, etc.
|
| IReaction
Represents the idea of a chemical reaction.
|
| IReaction.Direction
Permissible reaction directions.
|
| IReactionScheme
Classes that implement this interface of a scheme.
|
| IReactionSet
A set of reactions, for example those taking part in a reaction.
|
| IRing
Class representing a ring structure in a molecule.
|
| IRingSet
Maintains a set of Ring objects.
|
| ISingleElectron
A Single Electron is an orbital which is occupied by only one electron.
|
| IStereoElement
Represents the concept of a stereo element in the molecule.
|
| IStrand
A Strand is an AtomContainer which stores additional strand specific
informations for a group of Atoms.
|
| ISubstance
A chemical substance that consists of one or more chemical structures.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IReaction
Represents the idea of a chemical reaction.
|
| Class and Description |
|---|
| IChemObject
The base class for all chemical objects in this cdk.
|
| Class and Description |
|---|
| IChemObjectChangeEvent
Event fired by CDK IChemObject classes to their registered listeners
in case something changed within them.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| IRingSet
Maintains a set of Ring objects.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAdductFormula
Class defining an adduct object in a MolecularFormula.
|
| ICDKObject
The base class for all data objects in this CDK.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| IIsotope
Used to store and retrieve data of a particular isotope.
|
| IMolecularFormula
Class defining a molecular formula object.
|
| IMolecularFormulaSet
Class defining a molecular formula object.
|
| Class and Description |
|---|
| IMolecularFormula
Class defining a molecular formula object.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IChemModel
An object containing multiple MoleculeSet and
the other lower level concepts like rings, sequences,
fragments, etc.
|
| ICrystal
Class representing a molecular crystal.
|
| IReaction
Represents the idea of a chemical reaction.
|
| IRingSet
Maintains a set of Ring objects.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IDoubleBondStereochemistry
Stereochemistry specification for double bond stereochemistry.
|
| ITetrahedralChirality
Stereochemistry specification for quadrivalent atoms.
|
| ITetrahedralChirality.Stereo
Enumeration that defines the two possible chiralities for this stereochemistry type.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IRingSet
Maintains a set of Ring objects.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| Class and Description |
|---|
| IAminoAcid
A AminoAcid is Monomer which stores additional amino acid specific
informations, like the N-terminus atom.
|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IAtomType
The base class for atom types.
|
| IAtomType.Hybridization
An enum for the different hybridization states.
|
| IBioPolymer
A BioPolymer is a subclass of a Polymer which is supposed to store
additional informations about the Polymer which are connected to BioPolymers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IBond.Order
A list of permissible bond orders.
|
| IBond.Stereo
Enumeration of possible stereo types of two-atom bonds.
|
| ICDKObject
The base class for all data objects in this CDK.
|
| IChemModel
An object containing multiple MoleculeSet and
the other lower level concepts like rings, sequences,
fragments, etc.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| IChemObjectChangeEvent
Event fired by CDK IChemObject classes to their registered listeners
in case something changed within them.
|
| IChemObjectListener
Classes implementing this interface must implement this method
such that they react appropriately to changes in the object they
are interested in.
|
| IChemSequence
A sequence of ChemModels, which can, for example, be used to
store the course of a reaction.
|
| ICrystal
Class representing a molecular crystal.
|
| IDoubleBondStereochemistry
Stereochemistry specification for double bond stereochemistry.
|
| IDoubleBondStereochemistry.Conformation
Enumeration that defines the two possible values for this stereochemistry type.
|
| IElectronContainer
Base class for entities containing electrons, like bonds, orbitals, lone-pairs.
|
| IElement
Implements the idea of an element in the periodic table.
|
| IIsotope
Used to store and retrieve data of a particular isotope.
|
| ILonePair
A LonePair is an orbital primarily located with one Atom, containing
two electrons.
|
| IMapping
Represents a mapping of two atoms.
|
| IMolecularFormula
Class defining a molecular formula object.
|
| IMolecularFormulaSet
Class defining a molecular formula object.
|
| IMonomer
A Monomer is an AtomContainer which stores additional monomer specific
informations for a group of Atoms.
|
| IPDBAtom
A PDBAtom is a subclass of a Atom which is supposed to store additional informations about the Atom.
|
| IPDBMonomer
Represents the idea of an protein monomer as found in PDB files.
|
| IPDBPolymer
A PDBPolymer is a subclass of a BioPolymer which is supposed to store
additional informations about the BioPolymer which are connected to BioPolymers.
|
| IPDBStructure
Represents the idea of an chemical structure.
|
| IPolymer
Subclass of Molecule to store Polymer specific attributes that a Polymer has.
|
| IPseudoAtom
Represents the idea of a non-chemical atom-like entity, like Me,
R, X, Phe, His, etc.
|
| IReaction
Represents the idea of a chemical reaction.
|
| IReaction.Direction
Permissible reaction directions.
|
| IReactionScheme
Classes that implement this interface of a scheme.
|
| IReactionSet
A set of reactions, for example those taking part in a reaction.
|
| IRing
Class representing a ring structure in a molecule.
|
| IRingSet
Maintains a set of Ring objects.
|
| ISingleElectron
A Single Electron is an orbital which is occupied by only one electron.
|
| IStereoElement
Represents the concept of a stereo element in the molecule.
|
| IStrand
A Strand is an AtomContainer which stores additional strand specific
informations for a group of Atoms.
|
| ITetrahedralChirality
Stereochemistry specification for quadrivalent atoms.
|
| ITetrahedralChirality.Stereo
Enumeration that defines the two possible chiralities for this stereochemistry type.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| ICrystal
Class representing a molecular crystal.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IChemFile
An
IChemObject containing a number of ChemSequences. |
| IChemModel
An object containing multiple MoleculeSet and
the other lower level concepts like rings, sequences,
fragments, etc.
|
| IChemSequence
A sequence of ChemModels, which can, for example, be used to
store the course of a reaction.
|
| IMonomer
A Monomer is an AtomContainer which stores additional monomer specific
informations for a group of Atoms.
|
| IReaction
Represents the idea of a chemical reaction.
|
| IReactionSet
A set of reactions, for example those taking part in a reaction.
|
| IStrand
A Strand is an AtomContainer which stores additional strand specific
informations for a group of Atoms.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IChemModel
An object containing multiple MoleculeSet and
the other lower level concepts like rings, sequences,
fragments, etc.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IChemModel
An object containing multiple MoleculeSet and
the other lower level concepts like rings, sequences,
fragments, etc.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| Class and Description |
|---|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| Class and Description |
|---|
| IChemObject
The base class for all chemical objects in this cdk.
|
| Class and Description |
|---|
| ISetting
A simple setting that can be managed by the SettingManager.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IReaction
Represents the idea of a chemical reaction.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomType
The base class for atom types.
|
| IAtomType.Hybridization
An enum for the different hybridization states.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IBond.Order
A list of permissible bond orders.
|
| IBond.Stereo
Enumeration of possible stereo types of two-atom bonds.
|
| ICDKObject
The base class for all data objects in this CDK.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| IChemObjectChangeEvent
Event fired by CDK IChemObject classes to their registered listeners
in case something changed within them.
|
| IChemObjectListener
Classes implementing this interface must implement this method
such that they react appropriately to changes in the object they
are interested in.
|
| IElectronContainer
Base class for entities containing electrons, like bonds, orbitals, lone-pairs.
|
| IElement
Implements the idea of an element in the periodic table.
|
| IIsotope
Used to store and retrieve data of a particular isotope.
|
| ILonePair
A LonePair is an orbital primarily located with one Atom, containing
two electrons.
|
| ISingleElectron
A Single Electron is an orbital which is occupied by only one electron.
|
| IStereoElement
Represents the concept of a stereo element in the molecule.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomType
The base class for atom types.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IBond.Order
A list of permissible bond orders.
|
| ICDKObject
The base class for all data objects in this CDK.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| IElectronContainer
Base class for entities containing electrons, like bonds, orbitals, lone-pairs.
|
| IElement
Implements the idea of an element in the periodic table.
|
| IIsotope
Used to store and retrieve data of a particular isotope.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| IReaction
Represents the idea of a chemical reaction.
|
| IRing
Class representing a ring structure in a molecule.
|
| IRingSet
Maintains a set of Ring objects.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IChemFile
An
IChemObject containing a number of ChemSequences. |
| IChemModel
An object containing multiple MoleculeSet and
the other lower level concepts like rings, sequences,
fragments, etc.
|
| IChemSequence
A sequence of ChemModels, which can, for example, be used to
store the course of a reaction.
|
| ICrystal
Class representing a molecular crystal.
|
| IMonomer
A Monomer is an AtomContainer which stores additional monomer specific
informations for a group of Atoms.
|
| IPDBPolymer
A PDBPolymer is a subclass of a BioPolymer which is supposed to store
additional informations about the BioPolymer which are connected to BioPolymers.
|
| IReaction
Represents the idea of a chemical reaction.
|
| IReactionScheme
Classes that implement this interface of a scheme.
|
| IReactionSet
A set of reactions, for example those taking part in a reaction.
|
| Class and Description |
|---|
| IBond.Order
A list of permissible bond orders.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| ICDKObject
The base class for all data objects in this CDK.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemObjectListener
Classes implementing this interface must implement this method
such that they react appropriately to changes in the object they
are interested in.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IAtomType
The base class for atom types.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| IRingSet
Maintains a set of Ring objects.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomType
The base class for atom types.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| ICDKObject
The base class for all data objects in this CDK.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemObjectListener
Classes implementing this interface must implement this method
such that they react appropriately to changes in the object they
are interested in.
|
| IElectronContainer
Base class for entities containing electrons, like bonds, orbitals, lone-pairs.
|
| IElement
Implements the idea of an element in the periodic table.
|
| IIsotope
Used to store and retrieve data of a particular isotope.
|
| Class and Description |
|---|
| IBioPolymer
A BioPolymer is a subclass of a Polymer which is supposed to store
additional informations about the Polymer which are connected to BioPolymers.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomType
The base class for atom types.
|
| IBioPolymer
A BioPolymer is a subclass of a Polymer which is supposed to store
additional informations about the Polymer which are connected to BioPolymers.
|
| ICDKObject
The base class for all data objects in this CDK.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemObjectListener
Classes implementing this interface must implement this method
such that they react appropriately to changes in the object they
are interested in.
|
| IElement
Implements the idea of an element in the periodic table.
|
| IIsotope
Used to store and retrieve data of a particular isotope.
|
| IMonomer
A Monomer is an AtomContainer which stores additional monomer specific
informations for a group of Atoms.
|
| IPDBAtom
A PDBAtom is a subclass of a Atom which is supposed to store additional informations about the Atom.
|
| IPDBMonomer
Represents the idea of an protein monomer as found in PDB files.
|
| IPDBPolymer
A PDBPolymer is a subclass of a BioPolymer which is supposed to store
additional informations about the BioPolymer which are connected to BioPolymers.
|
| IPDBStructure
Represents the idea of an chemical structure.
|
| IPolymer
Subclass of Molecule to store Polymer specific attributes that a Polymer has.
|
| IStrand
A Strand is an AtomContainer which stores additional strand specific
informations for a group of Atoms.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IRingSet
Maintains a set of Ring objects.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| ISubstance
A chemical substance that consists of one or more chemical structures.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| ICDKObject
The base class for all data objects in this CDK.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemObjectListener
Classes implementing this interface must implement this method
such that they react appropriately to changes in the object they
are interested in.
|
| IReaction
Represents the idea of a chemical reaction.
|
| IReactionSet
A set of reactions, for example those taking part in a reaction.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IReaction
Represents the idea of a chemical reaction.
|
| Class and Description |
|---|
| IAtomContainerSet
A set of AtomContainers.
|
| IReactionSet
A set of reactions, for example those taking part in a reaction.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IChemModel
An object containing multiple MoleculeSet and
the other lower level concepts like rings, sequences,
fragments, etc.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IReaction
Represents the idea of a chemical reaction.
|
| IReactionSet
A set of reactions, for example those taking part in a reaction.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IBond.Order
A list of permissible bond orders.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IReaction
Represents the idea of a chemical reaction.
|
| IRing
Class representing a ring structure in a molecule.
|
| IRingSet
Maintains a set of Ring objects.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IChemModel
An object containing multiple MoleculeSet and
the other lower level concepts like rings, sequences,
fragments, etc.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IRingSet
Maintains a set of Ring objects.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| ICDKObject
The base class for all data objects in this CDK.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| IReaction
Represents the idea of a chemical reaction.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| Class and Description |
|---|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IBond.Order
A list of permissible bond orders.
|
| IBond.Stereo
Enumeration of possible stereo types of two-atom bonds.
|
| Class and Description |
|---|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IBond.Order
A list of permissible bond orders.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IReaction
Represents the idea of a chemical reaction.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IRingSet
Maintains a set of Ring objects.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IBond.Order
A list of permissible bond orders.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| ICDKObject
The base class for all data objects in this CDK.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| IDoubleBondStereochemistry
Stereochemistry specification for double bond stereochemistry.
|
| IDoubleBondStereochemistry.Conformation
Enumeration that defines the two possible values for this stereochemistry type.
|
| IStereoElement
Represents the concept of a stereo element in the molecule.
|
| ITetrahedralChirality
Stereochemistry specification for quadrivalent atoms.
|
| ITetrahedralChirality.Stereo
Enumeration that defines the two possible chiralities for this stereochemistry type.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAminoAcid
A AminoAcid is Monomer which stores additional amino acid specific
informations, like the N-terminus atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| Class and Description |
|---|
| IAminoAcid
A AminoAcid is Monomer which stores additional amino acid specific
informations, like the N-terminus atom.
|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IAtomType
The base class for atom types.
|
| IBioPolymer
A BioPolymer is a subclass of a Polymer which is supposed to store
additional informations about the Polymer which are connected to BioPolymers.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IBond.Order
A list of permissible bond orders.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| IRing
Class representing a ring structure in a molecule.
|
| IRingSet
Maintains a set of Ring objects.
|
| IStrand
A Strand is an AtomContainer which stores additional strand specific
informations for a group of Atoms.
|
| Class and Description |
|---|
| IChemObject
The base class for all chemical objects in this cdk.
|
| Class and Description |
|---|
| IAtomType.Hybridization
An enum for the different hybridization states.
|
| IBond.Order
A list of permissible bond orders.
|
| Class and Description |
|---|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| Class and Description |
|---|
| IAminoAcid
A AminoAcid is Monomer which stores additional amino acid specific
informations, like the N-terminus atom.
|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IAtomType
The base class for atom types.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IBond.Order
A list of permissible bond orders.
|
| IChemFile
An
IChemObject containing a number of ChemSequences. |
| IChemModel
An object containing multiple MoleculeSet and
the other lower level concepts like rings, sequences,
fragments, etc.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemObjectBuilder
A helper class to instantiate a
ICDKObject instance for a specific
implementation. |
| IChemSequence
A sequence of ChemModels, which can, for example, be used to
store the course of a reaction.
|
| IElectronContainer
Base class for entities containing electrons, like bonds, orbitals, lone-pairs.
|
| IElement
Implements the idea of an element in the periodic table.
|
| IIsotope
Used to store and retrieve data of a particular isotope.
|
| IMolecularFormula
Class defining a molecular formula object.
|
| IMolecularFormulaSet
Class defining a molecular formula object.
|
| IReaction
Represents the idea of a chemical reaction.
|
| IReactionScheme
Classes that implement this interface of a scheme.
|
| IReactionSet
A set of reactions, for example those taking part in a reaction.
|
| IRing
Class representing a ring structure in a molecule.
|
| IRingSet
Maintains a set of Ring objects.
|
| Class and Description |
|---|
| IAtom
Represents the idea of an chemical atom.
|
| IAtomContainer
Base class for all chemical objects that maintain a list of Atoms and
ElectronContainers.
|
| IAtomContainerSet
A set of AtomContainers.
|
| IAtomType
The base class for atom types.
|
| IBond
Implements the concept of a covalent bond between two or more atoms.
|
| IChemFile
An
IChemObject containing a number of ChemSequences. |
| IChemModel
An object containing multiple MoleculeSet and
the other lower level concepts like rings, sequences,
fragments, etc.
|
| IChemObject
The base class for all chemical objects in this cdk.
|
| IChemSequence
A sequence of ChemModels, which can, for example, be used to
store the course of a reaction.
|
| ICrystal
Class representing a molecular crystal.
|
| IElectronContainer
Base class for entities containing electrons, like bonds, orbitals, lone-pairs.
|
| IElement
Implements the idea of an element in the periodic table.
|
| IIsotope
Used to store and retrieve data of a particular isotope.
|
| IReaction
Represents the idea of a chemical reaction.
|
| IReactionSet
A set of reactions, for example those taking part in a reaction.
|
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