Uses of Class
org.openscience.cdk.geometry.cip.VisitedAtoms

Packages that use VisitedAtoms

Package	Description
org.openscience.cdk.geometry.cip

Uses of VisitedAtoms in org.openscience.cdk.geometry.cip

Methods in org.openscience.cdk.geometry.cip that return VisitedAtoms

Modifier and Type	Method and Description
VisitedAtoms	Ligand.getVisitedAtoms() Returns a list of visitedAtoms.
VisitedAtoms	ILigand.getVisitedAtoms() Returns a list of visitedAtoms.

Methods in org.openscience.cdk.geometry.cip with parameters of type VisitedAtoms

Modifier and Type	Method and Description
static ILigand	CIPTool.defineLigand(IAtomContainer container, VisitedAtoms visitedAtoms, int chiralAtom, int ligandAtom) Creates a ligand attached to a single chiral atom, where the involved atoms are identified by there index in the IAtomContainer.
void	VisitedAtoms.visited(VisitedAtoms visitedAtoms) Adds all atoms from the visitedAtoms list to the current list.

Constructors in org.openscience.cdk.geometry.cip with parameters of type VisitedAtoms

Constructor and Description
ImplicitHydrogenLigand(IAtomContainer container, VisitedAtoms visitedAtoms, IAtom centralAtom)
Ligand(IAtomContainer container, VisitedAtoms visitedAtoms, IAtom centralAtom, IAtom ligandAtom)