Uses of Interface
org.openscience.cdk.fingerprint.IBitFingerprint

Packages that use IBitFingerprint

Package	Description
org.openscience.cdk.fingerprint
org.openscience.cdk.modeling.builder3d
org.openscience.cdk.similarity

Uses of IBitFingerprint in org.openscience.cdk.fingerprint

Classes in org.openscience.cdk.fingerprint that implement IBitFingerprint

Modifier and Type	Class and Description
class	BitSetFingerprint
class	IntArrayFingerprint

Methods in org.openscience.cdk.fingerprint that return IBitFingerprint

Modifier and Type	Method and Description
IBitFingerprint	SubstructureFingerprinter.getBitFingerprint(IAtomContainer atomContainer) Returns the bit fingerprint for the given IAtomContainer.
IBitFingerprint	ShortestPathFingerprinter.getBitFingerprint(IAtomContainer ac) Generates a shortest path based BitSet fingerprint for the given AtomContainer.
IBitFingerprint	PubchemFingerprinter.getBitFingerprint(IAtomContainer atomContainer) Calculate 881 bit Pubchem fingerprint for a molecule.
IBitFingerprint	MACCSFingerprinter.getBitFingerprint(IAtomContainer container) Returns the bit fingerprint for the given IAtomContainer.
IBitFingerprint	ExtendedFingerprinter.getBitFingerprint(IAtomContainer container) Generates a fingerprint of the default size for the given AtomContainer, using path and ring metrics.
IBitFingerprint	EStateFingerprinter.getBitFingerprint(IAtomContainer atomContainer) Returns the bit fingerprint for the given IAtomContainer.
IBitFingerprint	CircularFingerprinter.getBitFingerprint(IAtomContainer mol) Calculates the circular fingerprint for the given IAtomContainer, and folds the result into a single bitset (see getSize()).
IBitFingerprint	SignatureFingerprinter.getBitFingerprint(IAtomContainer atomContainer)
IBitFingerprint	Fingerprinter.getBitFingerprint(IAtomContainer container) Generates a fingerprint of the default size for the given AtomContainer.
IBitFingerprint	LingoFingerprinter.getBitFingerprint(IAtomContainer iAtomContainer)
IBitFingerprint	IFingerprinter.getBitFingerprint(IAtomContainer container) Returns the bit fingerprint for the given IAtomContainer.
IBitFingerprint	Fingerprinter.getBitFingerprint(IAtomContainer container, AllRingsFinder ringFinder) Generates a fingerprint of the default size for the given AtomContainer.
IBitFingerprint	ExtendedFingerprinter.getBitFingerprint(IAtomContainer atomContainer, IRingSet ringSet, List<IRingSet> rslist) Generates a fingerprint of the default size for the given AtomContainer, using path and ring metrics.
static IBitFingerprint	FingerprinterTool.makeBitFingerprint(Map<String,Integer> features) Convert a mapping of features and their counts to a 1024-bit binary fingerprint.
static IBitFingerprint	FingerprinterTool.makeBitFingerprint(Map<String,Integer> features, int len) Convert a mapping of features and their counts to a binary fingerprint.
static IBitFingerprint	FingerprinterTool.makeBitFingerprint(Map<String,Integer> features, int len, int bits) Convert a mapping of features and their counts to a binary fingerprint.

Methods in org.openscience.cdk.fingerprint with parameters of type IBitFingerprint

Modifier and Type	Method and Description
void	IntArrayFingerprint.and(IBitFingerprint fingerprint)
void	BitSetFingerprint.and(IBitFingerprint fingerprint)
void	IBitFingerprint.and(IBitFingerprint fingerprint) Performs a logical AND of the bits in this target bit set with the bits in the argument fingerprint.
void	IntArrayFingerprint.or(IBitFingerprint fingerprint)
void	BitSetFingerprint.or(IBitFingerprint fingerprint)
void	IBitFingerprint.or(IBitFingerprint fingerprint) Performs a logical OR of the bits in this target bit set with the bits in the argument fingerprint.

Constructors in org.openscience.cdk.fingerprint with parameters of type IBitFingerprint

Constructor and Description
BitSetFingerprint(IBitFingerprint fingerprint)
IntArrayFingerprint(IBitFingerprint fingerprint)

Uses of IBitFingerprint in org.openscience.cdk.modeling.builder3d

Methods in org.openscience.cdk.modeling.builder3d that return types with arguments of type IBitFingerprint

Modifier and Type	Method and Description
List<IBitFingerprint>	TemplateExtractor.makeFingerprintsFromSdf(boolean anyAtom, boolean anyAtomAnyBond, Map<String,Integer> timings, BufferedReader fin, int limit)

Uses of IBitFingerprint in org.openscience.cdk.similarity

Methods in org.openscience.cdk.similarity with parameters of type IBitFingerprint

Modifier and Type	Method and Description
static double	Tanimoto.calculate(IBitFingerprint fingerprint1, IBitFingerprint fingerprint2) Evaluates Tanimoto coefficient for two IBitFingerprint.