Uses of Class
org.openscience.cdk.depict.DepictionGenerator

Packages that use DepictionGenerator

Package	Description
org.openscience.cdk.depict

Uses of DepictionGenerator in org.openscience.cdk.depict

Methods in org.openscience.cdk.depict that return DepictionGenerator

Modifier and Type	Method and Description
DepictionGenerator	DepictionGenerator.withAnnotationColor(Color color) Set the color annotations (e.g.
DepictionGenerator	DepictionGenerator.withAnnotationScale(double scale) Set the size of annotations relative to atom symbols.
DepictionGenerator	DepictionGenerator.withAtomColors() Color atom symbols using typical colors, oxygens are red, nitrogens are blue, etc.
DepictionGenerator	DepictionGenerator.withAtomColors(IAtomColorer colorer) Color atom symbols using provided colorer.
DepictionGenerator	DepictionGenerator.withAtomMapHighlight() Adds to the highlight the coloring of reaction atom-maps.
DepictionGenerator	DepictionGenerator.withAtomMapHighlight(Color[] colors) Adds to the highlight the coloring of reaction atom-maps.
DepictionGenerator	DepictionGenerator.withAtomMapNumbers() Display atom-atom mapping numbers on a reaction.
DepictionGenerator	DepictionGenerator.withAtomNumbers() Display atom numbers on the molecule or reaction.
DepictionGenerator	DepictionGenerator.withAtomValues() Display atom numbers on the molecule or reaction.
DepictionGenerator	DepictionGenerator.withBackgroundColor(Color color) Change the background color.
DepictionGenerator	DepictionGenerator.withCarbonSymbols() Display atom symbols for all atoms in the molecule.
DepictionGenerator	DepictionGenerator.withFillToFit() Resize depictions to fill all available space (only if a size is specified).
DepictionGenerator	DepictionGenerator.withHighlight(Iterable<? extends IChemObject> chemObjs, Color color) Highlight the provided set of atoms and bonds in the depiction in the specified color.
DepictionGenerator	DepictionGenerator.withMappedRxnAlign(boolean val) Specifies that reactions with atom-atom mappings should have their reactants/product coordinates aligned.
DepictionGenerator	DepictionGenerator.withMargin(double m) Specify a desired size of margin.
DepictionGenerator	DepictionGenerator.withMolTitle() Display a molecule title with each depiction.
DepictionGenerator	DepictionGenerator.withOuterGlowHighlight() Highlights are shown as an outer glow around the atom symbols and bonds rather than recoloring.
DepictionGenerator	DepictionGenerator.withOuterGlowHighlight(double width) Highlights are shown as an outer glow around the atom symbols and bonds rather than recoloring.
DepictionGenerator	DepictionGenerator.withPadding(double p) Specify a desired size of padding for molecule sets and reactions.
<T extends IGeneratorParameter<S>,S,U extends S> DepictionGenerator	DepictionGenerator.withParam(Class<T> key, U value) Low-level option method to set a rendering model parameter.
DepictionGenerator	DepictionGenerator.withRxnTitle() Display a reaction title with the depiction.
DepictionGenerator	DepictionGenerator.withSize(double w, double h) Specify a desired size of depiction.
DepictionGenerator	DepictionGenerator.withTerminalCarbons() Display atom symbols for terminal carbons (i.e.
DepictionGenerator	DepictionGenerator.withTitleColor(Color color) Set the color titles will appear in.
DepictionGenerator	DepictionGenerator.withTitleScale(double scale) Set the size of titles compared to atom symbols.
DepictionGenerator	DepictionGenerator.withZoom(double zoom) Specify a desired zoom factor - this changes the base size of a depiction and is used for uniformly making depictions bigger.