Uses of Class
org.openscience.cdk.tools.scaffold.ScaffoldNodeBase

Uses of ScaffoldNodeBase in org.openscience.cdk.tools.scaffold

Subclasses of ScaffoldNodeBase in org.openscience.cdk.tools.scaffold

Modifier and Type	Class	Description
class	NetworkNode<MoleculeType>	The NetworkNodes are nodes from which a ScaffoldNetwork can be built.
class	TreeNode<MoleculeType>	The TreeNodes are nodes from which a ScaffoldTree can be built.

Fields in org.openscience.cdk.tools.scaffold with type parameters of type ScaffoldNodeBase

Modifier and Type	Field	Description
protected List<ScaffoldNodeBase<MoleculeType>>	ScaffoldNodeBase.children	Children of the Node
protected HashMap<Integer,HashSet<ScaffoldNodeBase>>	ScaffoldNodeCollectionBase.levelMap	Saves all ScaffoldNodes according to their level.
protected HashMap<Integer,ScaffoldNodeBase>	ScaffoldNodeCollectionBase.nodeMap	Saves all ScaffoldNodes and numbers them in ascending order.
protected HashMap<ScaffoldNodeBase,Integer>	ScaffoldNodeCollectionBase.reverseNodeMap	Saves all ScaffoldNodes and numbers them in ascending order.
protected HashMap<String,ScaffoldNodeBase>	ScaffoldNodeCollectionBase.smilesMap	Saves all ScaffoldNodes according to their SMILES.

Methods in org.openscience.cdk.tools.scaffold that return ScaffoldNodeBase

Modifier and Type	Method	Description
abstract ScaffoldNodeBase<MoleculeType>	ScaffoldNodeBase.addChild(MoleculeType aMolecule)	Adds a child to the ScaffoldNodeBase, i.e. links it to a ScaffoldNodeBase on the level below
ScaffoldNodeBase	ScaffoldNodeCollectionBase.getMatrixNode(int aNumber)	Returns the node that belongs to a certain row and column number of the matrix.
ScaffoldNodeBase	ScaffoldNodeCollectionBase.getNode(org.openscience.cdk.interfaces.IAtomContainer aMolecule)	Return the ScaffoldNode that belongs to a specific molecule.

Methods in org.openscience.cdk.tools.scaffold that return types with arguments of type ScaffoldNodeBase

Modifier and Type	Method	Description
List<ScaffoldNodeBase>	ScaffoldNodeCollectionBase.getAllNodes()	Get all ScaffoldNodes of the Scaffold
List<ScaffoldNodeBase>	ScaffoldNodeCollectionBase.getAllNodesOnLevel(int aLevel)	Return all ScaffoldNodes that are at a certain level in the ScaffoldCollection.
List<ScaffoldNodeBase<MoleculeType>>	ScaffoldNodeBase.getChildren()	Get the children nodes.
Map<Integer,ScaffoldNodeBase>	ScaffoldNodeCollectionBase.getMatrixNodes()	Returns the number of the nodes and the nodes of the matrix in ascending order.

Methods in org.openscience.cdk.tools.scaffold with parameters of type ScaffoldNodeBase

Modifier and Type	Method	Description
void	ScaffoldNetwork.addNode(ScaffoldNodeBase aNode)	Add a node to the graph structure.
abstract void	ScaffoldNodeCollectionBase.addNode(ScaffoldNodeBase aNode)	Add ScaffoldNodeBase to the ScaffoldNodeCollectionBase.
void	ScaffoldTree.addNode(ScaffoldNodeBase aNode)	Add a node to the graph structure.
protected void	ScaffoldNodeCollectionBase.addNodeToCollections(ScaffoldNodeBase aNode)	Adds the node to the internal node collections node map, reverse node map, smiles map, and level map.
void	ScaffoldNetwork.removeNode(ScaffoldNodeBase aNode)	Removes a node.
abstract void	ScaffoldNodeCollectionBase.removeNode(ScaffoldNodeBase aNode)	Removes a node.
void	ScaffoldTree.removeNode(ScaffoldNodeBase aNode)	Removes a node.

Method parameters in org.openscience.cdk.tools.scaffold with type arguments of type ScaffoldNodeBase

Modifier and Type	Method	Description
void	ScaffoldNodeBase.setChildren(List<ScaffoldNodeBase<MoleculeType>> aChildren)	Set the children node.