MolHandler (cdk 2.9 API)

java.lang.Object
- org.openscience.cdk.smsd.tools.MolHandler

```
@Deprecated
public class MolHandler
extends Object
```
Deprecated.
A more recent version of SMSD is available at http://github.com/asad/smsd

Class that handles molecules for MCS search.

Author:

Syed Asad Rahman <asad@ebi.ac.uk>

Source code:
main

Belongs to CDK module:
smsd

Constructor Summary

Constructors
Constructor	Description
`MolHandler(String molFile, boolean removeHydrogen, boolean cleanMolecule)`	Deprecated. Creates a new instance of MolHandler
`MolHandler(IAtomContainer container, boolean removeHydrogen, boolean cleanMolecule)`	Deprecated. Creates a new instance of MolHandler

Method Summary

All Methods Instance Methods Concrete Methods Deprecated Methods
Modifier and Type	Method	Description
`IAtomContainer`	`getMolecule()`	Deprecated. Returns the modified container
`boolean`	`getRemoveHydrogenFlag()`	Deprecated. Returns true if hydrogens were made implicit else return false

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - MolHandler
```
public MolHandler(String molFile,
                  boolean removeHydrogen,
                  boolean cleanMolecule)
```
    Deprecated.
    
    Creates a new instance of MolHandler
    
    Parameters:
    
    molFile - atomContainer file name
    
    cleanMolecule -
    
    removeHydrogen -
  - MolHandler
```
public MolHandler(IAtomContainer container,
                  boolean removeHydrogen,
                  boolean cleanMolecule)
```
    Deprecated.
    
    Creates a new instance of MolHandler
    
    Parameters:
    
    container - Molecule AtomContainer
    
    cleanMolecule -
    
    removeHydrogen -
- Method Detail
  - getMolecule
```
public IAtomContainer getMolecule()
```
    Deprecated.
    
    Returns the modified container
    
    Returns:
    
    get processed / modified container
  - getRemoveHydrogenFlag
```
public boolean getRemoveHydrogenFlag()
```
    Deprecated.
    
    Returns true if hydrogens were made implicit else return false
    
    Returns:
    
    true if remove H else false