Package org.openscience.cdk.smsd.algorithm.vflib.interfaces

Interface IQuery

All Known Implementing Classes:
VFQueryBuilder
@Deprecated public interface IQuery
Deprecated.
SMSD has been deprecated from the CDK with a newer, more recent version of SMSD is available at http://github.com/asad/smsd.
Interface for the query molecule/graph.
Author:
Syed Asad Rahman <asad@ebi.ac.uk>

  • Method Summary

    Modifier and Type
    Method
    Description
    int
    countEdges()
    Deprecated.
    Returns edge count.
    int
    countNodes()
    Deprecated.
    Returns node count.
    Iterable<IEdge>
    edges()
    Deprecated.
    Returns edges of the query.
    IAtom
    getAtom(INode node)
    Deprecated.
    Returns an atom associated with this node.
    IEdge
    getEdge(int index)
    Deprecated.
    Returns an edge of the query mol at a given position.
    IEdge
    getEdge(INode source, INode target)
    Deprecated.
    Returns an edge associated between two nodes.
    INode
    getNode(int index)
    Deprecated.
    Returns a node of the query mol at a given position.
    Iterable<INode>
    nodes()
    Deprecated.
    Returns nodes of the query.

  • Method Details

    • nodes

      Iterable<INode> nodes()
      Deprecated.
      Returns nodes of the query.
      Returns:
      node Iterable.

    • getNode

      INode getNode(int index)
      Deprecated.
      Returns a node of the query mol at a given position.
      Parameters:
      index - at position.
      Returns:
      node.

    • edges

      Iterable<IEdge> edges()
      Deprecated.
      Returns edges of the query.
      Returns:
      edge Iterable.

    • getEdge

      IEdge getEdge(int index)
      Deprecated.
      Returns an edge of the query mol at a given position.
      Parameters:
      index - at position.
      Returns:
      edge

    • getAtom

      IAtom getAtom(INode node)
      Deprecated.
      Returns an atom associated with this node.
      Parameters:
      node - get Atom of this node.
      Returns:
      atom of this node

    • getEdge

      IEdge getEdge(INode source, INode target)
      Deprecated.
      Returns an edge associated between two nodes.
      Parameters:
      source - get an between source.
      target - and target.
      Returns:
      IEdge egde between source and target.

    • countEdges

      int countEdges()
      Deprecated.
      Returns edge count.
      Returns:
      edge count.

    • countNodes

      int countNodes()
      Deprecated.
      Returns node count.
      Returns:
      node count.