All Known Implementing Classes:
VFQueryBuilder

@Deprecated public interface IQuery
Deprecated.
SMSD has been deprecated from the CDK with a newer, more recent version of SMSD is available at http://github.com/asad/smsd.
Interface for the query molecule/graph.
Author:
Syed Asad Rahman <asad@ebi.ac.uk>
Source code:
main
Belongs to CDK module:
smsd
  • Method Summary

    Modifier and Type
    Method
    Description
    int
    Deprecated.
    Returns edge count.
    int
    Deprecated.
    Returns node count.
    Deprecated.
    Returns edges of the query.
    getAtom(INode node)
    Deprecated.
    Returns an atom associated with this node.
    getEdge(int index)
    Deprecated.
    Returns an edge of the query mol at a given position.
    getEdge(INode source, INode target)
    Deprecated.
    Returns an edge associated between two nodes.
    getNode(int index)
    Deprecated.
    Returns a node of the query mol at a given position.
    Deprecated.
    Returns nodes of the query.
  • Method Details

    • nodes

      Iterable<INode> nodes()
      Deprecated.
      Returns nodes of the query.
      Returns:
      node Iterable.
    • getNode

      INode getNode(int index)
      Deprecated.
      Returns a node of the query mol at a given position.
      Parameters:
      index - at position.
      Returns:
      node.
    • edges

      Iterable<IEdge> edges()
      Deprecated.
      Returns edges of the query.
      Returns:
      edge Iterable.
    • getEdge

      IEdge getEdge(int index)
      Deprecated.
      Returns an edge of the query mol at a given position.
      Parameters:
      index - at position.
      Returns:
      edge
    • getAtom

      IAtom getAtom(INode node)
      Deprecated.
      Returns an atom associated with this node.
      Parameters:
      node - get Atom of this node.
      Returns:
      atom of this node
    • getEdge

      IEdge getEdge(INode source, INode target)
      Deprecated.
      Returns an edge associated between two nodes.
      Parameters:
      source - get an between source.
      target - and target.
      Returns:
      IEdge egde between source and target.
    • countEdges

      int countEdges()
      Deprecated.
      Returns edge count.
      Returns:
      edge count.
    • countNodes

      int countNodes()
      Deprecated.
      Returns node count.
      Returns:
      node count.