org.openscience.cdk.smsd.algorithm.vflib.builder

Class TargetProperties

java.lang.Object

org.openscience.cdk.smsd.algorithm.vflib.builder.TargetProperties

All Implemented Interfaces:

Serializable

Deprecated.

SMSD has been deprecated from the CDK with a newer, more recent version of SMSD is available at http://github.com/asad/smsd.

@Deprecated
public class TargetProperties
extends Object
implements Serializable

Class for building/storing nodes (atoms) in the graph with atom query capabilities.

Author:

Syed Asad Rahman <asad@ebi.ac.uk>

See Also:

Serialized Form

Source code:

master

Belongs to CDK module:

smsd

Constructor Summary

Constructors

Constructor and Description
TargetProperties(IAtomContainer container) Deprecated.

Method Summary

Modifier and Type	Method and Description
Integer	countNeighbors(IAtom atom) Deprecated.
IAtom	getAtom(int j) Deprecated.
int	getAtomCount() Deprecated.
IBond	getBond(IAtom atom1, IAtom atom2) Deprecated.
List<IAtom>	getNeighbors(IAtom atom) Deprecated.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TargetProperties

public TargetProperties(IAtomContainer container)

Deprecated.

Parameters:

container -

Method Detail

countNeighbors

public Integer countNeighbors(IAtom atom)

Deprecated.

Parameters:

atom -

Returns:

the connectedTargetAtomCountMap

getNeighbors

public List<IAtom> getNeighbors(IAtom atom)

Deprecated.

Parameters:

atom -

Returns:

the connected Target Atom List

getBond

public IBond getBond(IAtom atom1,
                     IAtom atom2)

Deprecated.

Parameters:

atom1 -

atom2 -

Returns:

the map

getAtomCount

public int getAtomCount()

Deprecated.

Returns:

atom count

getAtom

public IAtom getAtom(int j)

Deprecated.