Package org.openscience.cdk.smsd.algorithm.rgraph

Class CDKRNode

  • @Deprecated
public class CDKRNode
extends Object
    Deprecated.
    This class is part of SMSD and either duplicates functionality elsewhere in the CDK or provides public access to internal implementation details. SMSD has been deprecated from the CDK with a newer, more recent version of SMSD is available at http://github.com/asad/smsd.
    Node of the resolution graphe (RGraph) An CDKRNode represents an association betwwen two edges of the source graphs G1 and G2 that are compared. Two edges may be associated if they have at least one common feature. The association is defined outside this class. The node keeps tracks of the ID of the mapped edges (in an CDKRMap), of its neighbours in the RGraph it belongs to and of the set of incompatible nodes (nodes that may not be along with this node in the same solution)
    Author:
    Stephane Werner from IXELIS mail@ixelis.net
    Source code:
    main
    Belongs to CDK module:
    smsd
    Created on:
    2002-07-17

    • Constructor Detail

      • CDKRNode

        public CDKRNode​(int id1,
                int id2)
        Deprecated.
        Constructor for the RNode object
        Parameters:
        id1 - number of the bond in the graphe 1
        id2 - number of the bond in the graphe 2

    • Method Detail

      • setRMap

        public void setRMap​(CDKRMap rMap)
        Deprecated.
        Sets the rMap attribute of the RNode object
        Parameters:
        rMap - The new rMap value

      • setExtension

        public void setExtension​(BitSet extension)
        Deprecated.
        Sets the extension attribute of the RNode object
        Parameters:
        extension - The new extension value

      • setForbidden

        public void setForbidden​(BitSet forbidden)
        Deprecated.
        Sets the forbidden attribute of the RNode object
        Parameters:
        forbidden - The new forbidden value

      • getRMap

        public CDKRMap getRMap()
        Deprecated.
        Gets the rMap attribute of the RNode object
        Returns:
        The rMap value

      • getExtension

        public BitSet getExtension()
        Deprecated.
        Gets the extension attribute of the RNode object
        Returns:
        The extension value

      • getForbidden

        public BitSet getForbidden()
        Deprecated.
        Gets the forbidden attribute of the RNode object
        Returns:
        The forbidden value

      • toString

        public String toString()
        Deprecated.
        Returns a string representation of the RNode
        Overrides:
        toString in class Object
        Returns:
        the string representation of the RNode

      • getrMap

        public CDKRMap getrMap()
        Deprecated.
        Returns resolution Map
        Returns:
        the rMap

      • setrMap

        public void setrMap​(CDKRMap rMap)
        Deprecated.
        Sets resolution map/graph
        Parameters:
        rMap - the rMap to set