Class DefaultBondMatcher
- java.lang.Object
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- org.openscience.cdk.smsd.algorithm.matchers.DefaultBondMatcher
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- All Implemented Interfaces:
BondMatcher
@Deprecated public class DefaultBondMatcher extends Object implements BondMatcher
Deprecated.This class is part of SMSD and either duplicates functionality elsewhere in the CDK or provides public access to internal implementation details. SMSD has been deprecated from the CDK with a newer, more recent version of SMSD is available at http://github.com/asad/smsd.Checks if a bond is matching between query and target molecules.- Author:
- Syed Asad Rahman <asad@ebi.ac.uk>
- Source code:
- main
- Belongs to CDK module:
- smsd
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Constructor Summary
Constructors Constructor Description DefaultBondMatcher()
Deprecated.ConstructorDefaultBondMatcher(IAtomContainer queryMol, IBond queryBond, boolean shouldMatchBonds)
Deprecated.ConstructorDefaultBondMatcher(IQueryBond queryBond)
Deprecated.Constructor
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Method Summary
All Methods Instance Methods Concrete Methods Deprecated Methods Modifier and Type Method Description boolean
isBondMatchFlag()
Deprecated.boolean
matches(IAtomContainer targetContainer, IBond targetBond)
Deprecated.void
setBondMatchFlag(boolean shouldMatchBonds)
Deprecated.
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Constructor Detail
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DefaultBondMatcher
public DefaultBondMatcher()
Deprecated.Constructor
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DefaultBondMatcher
public DefaultBondMatcher(IAtomContainer queryMol, IBond queryBond, boolean shouldMatchBonds)
Deprecated.Constructor- Parameters:
queryMol
- query MoleculequeryBond
- query MoleculeshouldMatchBonds
- bond match flag
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DefaultBondMatcher
public DefaultBondMatcher(IQueryBond queryBond)
Deprecated.Constructor- Parameters:
queryBond
- query Molecule
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Method Detail
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matches
public boolean matches(IAtomContainer targetContainer, IBond targetBond)
Deprecated.- Specified by:
matches
in interfaceBondMatcher
- Parameters:
targetContainer
- target containertargetBond
- target bond- Returns:
- true if bonds match
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isBondMatchFlag
public boolean isBondMatchFlag()
Deprecated.- Returns:
- the shouldMatchBonds
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setBondMatchFlag
public final void setBondMatchFlag(boolean shouldMatchBonds)
Deprecated.- Parameters:
shouldMatchBonds
- the shouldMatchBonds to set
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