Package org.openscience.cdk.smsd.algorithm.matchers

Class DefaultBondMatcher

java.lang.Object

org.openscience.cdk.smsd.algorithm.matchers.DefaultBondMatcher

All Implemented Interfaces:

BondMatcher

@Deprecated
public class DefaultBondMatcher
extends Object
implements BondMatcher

Deprecated.

This class is part of SMSD and either duplicates functionality elsewhere in the CDK or provides public access to internal implementation details. SMSD has been deprecated from the CDK with a newer, more recent version of SMSD is available at http://github.com/asad/smsd.

Checks if a bond is matching between query and target molecules.

Author:

Syed Asad Rahman <asad@ebi.ac.uk>

Source code:

main

Belongs to CDK module:

smsd

Constructor Summary

Constructors

Constructor	Description
DefaultBondMatcher()	Deprecated. Constructor
DefaultBondMatcher(IAtomContainer queryMol, IBond queryBond, boolean shouldMatchBonds)	Deprecated. Constructor
DefaultBondMatcher(IQueryBond queryBond)	Deprecated. Constructor

Method Summary

Modifier and Type	Method	Description
boolean	isBondMatchFlag()	Deprecated.
boolean	matches(IAtomContainer targetContainer, IBond targetBond)	Deprecated.
final void	setBondMatchFlag(boolean shouldMatchBonds)	Deprecated.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

DefaultBondMatcher

public DefaultBondMatcher()

Deprecated.

Constructor

DefaultBondMatcher

public DefaultBondMatcher(IAtomContainer queryMol,
 IBond queryBond,
 boolean shouldMatchBonds)

Deprecated.

Constructor

Parameters:

queryMol - query Molecule

queryBond - query Molecule

shouldMatchBonds - bond match flag

DefaultBondMatcher

public DefaultBondMatcher(IQueryBond queryBond)

Deprecated.

Constructor

Parameters:

queryBond - query Molecule

Method Details

matches

public boolean matches(IAtomContainer targetContainer,
 IBond targetBond)

Deprecated.

Specified by:

matches in interface BondMatcher

Parameters:

targetContainer - target container

targetBond - target bond

Returns:

true if bonds match

isBondMatchFlag

public boolean isBondMatchFlag()

Deprecated.

Returns:

the shouldMatchBonds

setBondMatchFlag

public final void setBondMatchFlag(boolean shouldMatchBonds)

Deprecated.

Parameters:

shouldMatchBonds - the shouldMatchBonds to set