Class DefaultBondMatcher
java.lang.Object
org.openscience.cdk.smsd.algorithm.matchers.DefaultBondMatcher
- All Implemented Interfaces:
BondMatcher
Deprecated.
This class is part of SMSD and either duplicates functionality elsewhere in the CDK or provides public
access to internal implementation details. SMSD has been deprecated from the CDK with a newer, more recent
version of SMSD is available at http://github.com/asad/smsd.
Checks if a bond is matching between query and target molecules.
- Author:
- Syed Asad Rahman <asad@ebi.ac.uk>
- Source code:
- main
- Belongs to CDK module:
- smsd
-
Constructor Summary
ConstructorsConstructorDescriptionDeprecated.ConstructorDefaultBondMatcher
(IAtomContainer queryMol, IBond queryBond, boolean shouldMatchBonds) Deprecated.ConstructorDefaultBondMatcher
(IQueryBond queryBond) Deprecated.Constructor -
Method Summary
Modifier and TypeMethodDescriptionboolean
Deprecated.boolean
matches
(IAtomContainer targetContainer, IBond targetBond) Deprecated.final void
setBondMatchFlag
(boolean shouldMatchBonds) Deprecated.
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Constructor Details
-
DefaultBondMatcher
public DefaultBondMatcher()Deprecated.Constructor -
DefaultBondMatcher
Deprecated.Constructor- Parameters:
queryMol
- query MoleculequeryBond
- query MoleculeshouldMatchBonds
- bond match flag
-
DefaultBondMatcher
Deprecated.Constructor- Parameters:
queryBond
- query Molecule
-
-
Method Details
-
matches
Deprecated.- Specified by:
matches
in interfaceBondMatcher
- Parameters:
targetContainer
- target containertargetBond
- target bond- Returns:
- true if bonds match
-
isBondMatchFlag
public boolean isBondMatchFlag()Deprecated.- Returns:
- the shouldMatchBonds
-
setBondMatchFlag
public final void setBondMatchFlag(boolean shouldMatchBonds) Deprecated.- Parameters:
shouldMatchBonds
- the shouldMatchBonds to set
-