Package org.openscience.cdk.ringsearch.cyclebasis

Class CycleBasis

java.lang.Object
org.openscience.cdk.ringsearch.cyclebasis.CycleBasis
@Deprecated public class CycleBasis extends Object
Deprecated.
internal implemenation detail from SSSRFinder, do not use
A minimum basis of all cycles in a graph. All cycles in a graph G can be constructed from the basis cycles by binary addition of their invidence vectors. A minimum cycle basis is a Matroid.
Author:
Ulrich Bauer <ulrich.bauer@alumni.tum.de>
Source code:
main
Belongs to CDK module:
standard

  • Constructor Details

    • CycleBasis

      public CycleBasis(org._3pq.jgrapht.UndirectedGraph g)
      Deprecated.
      Constructs a minimum cycle basis of a graph.
      Parameters:
      g - the graph for the cycle basis

  • Method Details

    • weightVector

      public int[] weightVector()
      Deprecated.

    • cycles

      public Collection cycles()
      Deprecated.
      Returns the cycles that form the cycle basis.
      Returns:
      a Collection of the basis cycles

    • essentialCycles

      public Collection essentialCycles()
      Deprecated.
      Returns the essential cycles of this cycle basis. A essential cycle is contained in every minimum cycle basis of a graph.
      Returns:
      a Collection of the essential cycles

    • relevantCycles

      public Map relevantCycles()
      Deprecated.
      Returns the essential cycles of this cycle basis. A relevant cycle is contained in some minimum cycle basis of a graph.
      Returns:
      a Map mapping each relevant cycles to the corresponding basis cycle in this basis

    • equivalenceClasses

      public List equivalenceClasses()
      Deprecated.
      Returns the connected components of this cycle basis, in regard to matroid theory. Two cycles belong to the same commected component if there is a circuit (a minimal dependent set) containing both cycles.
      Returns:
      a List of Sets consisting of the cycles in a equivalence class.