Uses of Class
org.openscience.cdk.pharmacophore.PharmacophoreQuery
Packages that use PharmacophoreQuery
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Uses of PharmacophoreQuery in org.openscience.cdk.pharmacophore
Methods in org.openscience.cdk.pharmacophore that return PharmacophoreQueryModifier and TypeMethodDescriptionPharmacophoreMatcher.getPharmacophoreQuery()
Get the query pharmacophore.Methods in org.openscience.cdk.pharmacophore that return types with arguments of type PharmacophoreQueryModifier and TypeMethodDescriptionstatic List<PharmacophoreQuery>
PharmacophoreUtils.readPharmacophoreDefinitions
(InputStream ins) Read in a set of pharmacophore definitions to create pharmacophore queries.static List<PharmacophoreQuery>
PharmacophoreUtils.readPharmacophoreDefinitions
(String filename) Read in a set of pharmacophore definitions to create pharmacophore queries.Methods in org.openscience.cdk.pharmacophore with parameters of type PharmacophoreQueryModifier and TypeMethodDescriptionvoid
PharmacophoreMatcher.setPharmacophoreQuery
(PharmacophoreQuery query) Set a pharmacophore query.static void
PharmacophoreUtils.writePharmacophoreDefinition
(PharmacophoreQuery[] queries, OutputStream out) Write out one or more pharmacophore queries in the CDK XML format.static void
PharmacophoreUtils.writePharmacophoreDefinition
(PharmacophoreQuery query, OutputStream out) Write out one or more pharmacophore queries in the CDK XML format.Method parameters in org.openscience.cdk.pharmacophore with type arguments of type PharmacophoreQueryModifier and TypeMethodDescriptionstatic void
PharmacophoreUtils.writePharmacophoreDefinition
(List<PharmacophoreQuery> queries, OutputStream out) Write out one or more pharmacophore queries in the CDK XML format.Constructors in org.openscience.cdk.pharmacophore with parameters of type PharmacophoreQueryModifierConstructorDescriptionPharmacophoreMatcher
(PharmacophoreQuery pharmacophoreQuery) Initialize the matcher with a query.