Uses of Class
org.openscience.cdk.pharmacophore.PharmacophoreAtom

Packages that use PharmacophoreAtom

Package	Description
org.openscience.cdk.pharmacophore

Uses of PharmacophoreAtom in org.openscience.cdk.pharmacophore

Methods in org.openscience.cdk.pharmacophore that return PharmacophoreAtom

Modifier and Type	Method	Description
static PharmacophoreAtom	PharmacophoreAtom.get(IAtom atom)

Methods in org.openscience.cdk.pharmacophore that return types with arguments of type PharmacophoreAtom

Modifier and Type	Method	Description
List<List<PharmacophoreAtom>>	PharmacophoreMatcher.getMatchingPharmacophoreAtoms()	Get the matching pharmacophore groups.
List<List<PharmacophoreAtom>>	PharmacophoreMatcher.getUniqueMatchingPharmacophoreAtoms()	Get the uniue matching pharmacophore groups.

Constructors in org.openscience.cdk.pharmacophore with parameters of type PharmacophoreAtom

Constructor	Description
PharmacophoreAngleBond(PharmacophoreAtom patom1, PharmacophoreAtom patom2, PharmacophoreAtom patom3)	Create a pharmacophore distance constraint.
PharmacophoreAtom(PharmacophoreAtom pharmacophoreAtom)	Create a pharmacophore group.
PharmacophoreBond(PharmacophoreAtom patom1, PharmacophoreAtom patom2)	Create a pharmacophore distance constraint.