Package org.openscience.cdk.libio.jena

Class Convertor

java.lang.Object

org.openscience.cdk.libio.jena.Convertor

public class Convertor
extends Object

Helper class that converts a CDK IChemObject into RDF using a Jena model and the CDK data model ontology.

Source code:

main

Belongs to CDK module:

iordf

Keywords:

Resource Description Framework, Jena, RDF, Web Ontology Language, OWL

Constructor Summary

Constructors

Constructor	Description
Convertor()

Method Summary

Modifier and Type	Method	Description
static IAtomContainer	model2Molecule(org.apache.jena.rdf.model.Model model, IChemObjectBuilder builder)	Converts a Model into an IAtomContainer using the given IChemObjectBuilder.
static org.apache.jena.rdf.model.Model	molecule2Model(IAtomContainer molecule)	Converts a IAtomContainer into a Model representation using the CDK OWL.
static org.apache.jena.rdf.model.Resource	order2Resource(IBond.Order order)	Create the Resource matching the given IBond.Order.
static IBond.Order	resource2Order(org.apache.jena.rdf.model.Resource rdfOrder)	Converts a Resource object into the matching IBond.Order.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Convertor

public Convertor()

Method Detail

molecule2Model

public static org.apache.jena.rdf.model.Model molecule2Model(IAtomContainer molecule)

Converts a IAtomContainer into a Model representation using the CDK OWL.

Parameters:

molecule - IAtomContainer to serialize into a RDF graph.

Returns:

the RDF graph representing the IAtomContainer.

resource2Order

public static IBond.Order resource2Order(org.apache.jena.rdf.model.Resource rdfOrder)

Converts a Resource object into the matching IBond.Order.

Parameters:

rdfOrder - Resource for which the matching IBond.Order should be given.

Returns:

the matching IBond.Order.

order2Resource

public static org.apache.jena.rdf.model.Resource order2Resource(IBond.Order order)

Create the Resource matching the given IBond.Order.

Parameters:

order - bond order to return the matching Resource for.

Returns:

the matching Resource.

model2Molecule

public static IAtomContainer model2Molecule(org.apache.jena.rdf.model.Model model,
                                            IChemObjectBuilder builder)

Converts a Model into an IAtomContainer using the given IChemObjectBuilder.

Parameters:

model - RDF graph to deserialize into an IAtomContainer.

builder - IChemObjectBuilder used to create new IChemObjects.

Returns:

a IAtomContainer deserialized from the RDF graph.