Uses of Class
org.openscience.cdk.isomorphism.Mappings

Packages that use Mappings

Package	Description
org.openscience.cdk.isomorphism
org.openscience.cdk.smarts
org.openscience.cdk.smiles.smarts

Uses of Mappings in org.openscience.cdk.isomorphism

Methods in org.openscience.cdk.isomorphism that return Mappings

Modifier and Type	Method	Description
Mappings	Mappings.exclusiveAtoms()	Filter the mappings for those which cover an exclusive set of atoms in the target.
Mappings	Mappings.filter(Predicate<int[]> predicate)	Filter the mappings and keep only those which match the provided predicate (Guava).
Mappings	Mappings.limit(int limit)	Limit the number of mappings - only this number of mappings will be generate.
Mappings	DfPattern.matchAll(IAtomContainer mol)	Find all mappings of this pattern in the target.
abstract Mappings	Pattern.matchAll(IAtomContainer target)	Find all mappings of this pattern in the target.
Mappings	Pattern.matchAll(IReaction target)	Find all mappings of this pattern in the target reaction.
Mappings	Ullmann.matchAll(IAtomContainer target)
Mappings	VentoFoggia.matchAll(IAtomContainer target)	Find all mappings of this pattern in the target.
Mappings	Mappings.stereochemistry()	Deprecated. Results now automatically consider stereo if it's present, to match without stereochemistry remove the stereo features.
Mappings	Mappings.uniqueAtoms()	Filter the mappings for those which cover a unique atoms in the target.
Mappings	Mappings.uniqueBonds()	Filter the mappings for those which cover a unique set of bonds in the target.

Uses of Mappings in org.openscience.cdk.smarts

Methods in org.openscience.cdk.smarts that return Mappings

Modifier and Type	Method	Description
Mappings	SmartsPattern.matchAll(IAtomContainer target)	Obtain the mappings of the query pattern against the target compound.

Uses of Mappings in org.openscience.cdk.smiles.smarts

Methods in org.openscience.cdk.smiles.smarts that return Mappings

Modifier and Type	Method	Description
Mappings	SmartsPattern.matchAll(IAtomContainer target)	Deprecated. Obtain the mappings of the query pattern against the target compound.