Uses of Interface
org.openscience.cdk.interfaces.IStrand
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Uses of IStrand in org.openscience.cdk
Classes in org.openscience.cdk that implement IStrand Modifier and Type Class Description class
Strand
A Strand is an AtomContainer which stores additional strand specific informations for a group of Atoms.Methods in org.openscience.cdk that return IStrand Modifier and Type Method Description IStrand
Strand. clone()
IStrand
BioPolymer. getStrand(String cName)
Retrieves a Monomer object by specifying its name.Methods in org.openscience.cdk that return types with arguments of type IStrand Modifier and Type Method Description Map<String,IStrand>
BioPolymer. getStrands()
Methods in org.openscience.cdk with parameters of type IStrand Modifier and Type Method Description void
BioPolymer. addAtom(IAtom oAtom, IMonomer oMonomer, IStrand oStrand)
Adds the atom to a specified Strand and a specified Monomer.void
BioPolymer. addAtom(IAtom oAtom, IStrand oStrand)
Adds the atom oAtom to a specified Strand, whereas the Monomer is unspecified. -
Uses of IStrand in org.openscience.cdk.debug
Classes in org.openscience.cdk.debug that implement IStrand Modifier and Type Class Description class
DebugStrand
Debugging data class.Methods in org.openscience.cdk.debug that return IStrand Modifier and Type Method Description IStrand
DebugStrand. clone()
Clones thisIChemObject
.IStrand
DebugBioPolymer. getStrand(String cName)
Retrieves a Monomer object by specifying its name.Methods in org.openscience.cdk.debug that return types with arguments of type IStrand Modifier and Type Method Description Map<String,IStrand>
DebugBioPolymer. getStrands()
Returns a Map containing the strands in the Polymer.Methods in org.openscience.cdk.debug with parameters of type IStrand Modifier and Type Method Description void
DebugBioPolymer. addAtom(IAtom oAtom, IMonomer oMonomer, IStrand oStrand)
Adds the atom to a specified Strand and a specified Monomer.void
DebugBioPolymer. addAtom(IAtom oAtom, IStrand oStrand)
Adds the atom oAtom to a specified Strand, whereas the Monomer is unspecified. -
Uses of IStrand in org.openscience.cdk.interfaces
Methods in org.openscience.cdk.interfaces that return IStrand Modifier and Type Method Description IStrand
IStrand. clone()
Returns a deep clone of this IChemObject.IStrand
IBioPolymer. getStrand(String cName)
Retrieve a Monomer object by specifying its name.Methods in org.openscience.cdk.interfaces that return types with arguments of type IStrand Modifier and Type Method Description Map<String,IStrand>
IBioPolymer. getStrands()
Returns a Map containing the strands in the Polymer.Methods in org.openscience.cdk.interfaces with parameters of type IStrand Modifier and Type Method Description void
IBioPolymer. addAtom(IAtom oAtom, IMonomer oMonomer, IStrand oStrand)
Adds the atom to a specified Strand and a specified Monomer.void
IBioPolymer. addAtom(IAtom oAtom, IStrand oStrand)
Adds the atom oAtom to a specified Strand, whereas the Monomer is unspecified.void
IPDBPolymer. addAtom(IPDBAtom oAtom, IMonomer oMonomer, IStrand oStrand)
Adds the atom to a specified Strand and a specified Monomer. -
Uses of IStrand in org.openscience.cdk.io.cml
Fields in org.openscience.cdk.io.cml declared as IStrand Modifier and Type Field Description protected IStrand
CMLCoreModule. currentStrand
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Uses of IStrand in org.openscience.cdk.protein.data
Classes in org.openscience.cdk.protein.data that implement IStrand Modifier and Type Class Description class
PDBStrand
An entry in the PDB database.Methods in org.openscience.cdk.protein.data with parameters of type IStrand Modifier and Type Method Description void
PDBPolymer. addAtom(IPDBAtom oAtom, IMonomer oMonomer, IStrand oStrand)
Adds the IPDBAtom oAtom to a specified Monomer of a specified Strand. -
Uses of IStrand in org.openscience.cdk.silent
Classes in org.openscience.cdk.silent that implement IStrand Modifier and Type Class Description class
Strand
A Strand is an AtomContainer which stores additional strand specific informations for a group of Atoms.Methods in org.openscience.cdk.silent that return IStrand Modifier and Type Method Description IStrand
Strand. clone()
IStrand
BioPolymer. getStrand(String cName)
Retrieves a Monomer object by specifying its name.Methods in org.openscience.cdk.silent that return types with arguments of type IStrand Modifier and Type Method Description Map<String,IStrand>
BioPolymer. getStrands()
Methods in org.openscience.cdk.silent with parameters of type IStrand Modifier and Type Method Description void
BioPolymer. addAtom(IAtom oAtom, IMonomer oMonomer, IStrand oStrand)
Adds the atom to a specified Strand and a specified Monomer.void
BioPolymer. addAtom(IAtom oAtom, IStrand oStrand)
Adds the atom oAtom to a specified Strand, whereas the Monomer is unspecified.void
PDBPolymer. addAtom(IPDBAtom oAtom, IMonomer oMonomer, IStrand oStrand)
Adds the IPDBAtom oAtom to a specified Monomer of a specified Strand. -
Uses of IStrand in org.openscience.cdk.tools
Methods in org.openscience.cdk.tools with parameters of type IStrand Modifier and Type Method Description static IBioPolymer
ProteinBuilderTool. addAminoAcidAtCTerminus(IBioPolymer protein, IAminoAcid aaToAdd, IStrand strand, IAminoAcid aaToAddTo)
Builds a protein by connecting a new amino acid at the C-terminus of the given strand.static IBioPolymer
ProteinBuilderTool. addAminoAcidAtNTerminus(IBioPolymer protein, IAminoAcid aaToAdd, IStrand strand, IAminoAcid aaToAddTo)
Builds a protein by connecting a new amino acid at the N-terminus of the given strand.
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