Uses of Interface
org.openscience.cdk.interfaces.ISingleElectron
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Packages that use ISingleElectron Package Description org.openscience.cdk org.openscience.cdk.debug org.openscience.cdk.interfaces org.openscience.cdk.isomorphism.matchers org.openscience.cdk.silent -
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Uses of ISingleElectron in org.openscience.cdk
Classes in org.openscience.cdk that implement ISingleElectron Modifier and Type Class Description class
SingleElectron
A Single Electron is an orbital which is occupied by only one electron.Fields in org.openscience.cdk declared as ISingleElectron Modifier and Type Field Description protected ISingleElectron[]
AtomContainer. singleElectrons
Internal array of single electrons.Methods in org.openscience.cdk that return ISingleElectron Modifier and Type Method Description ISingleElectron
AtomContainer. getSingleElectron(int idx)
Get the single electron at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getSingleElectronCount()
.ISingleElectron
AtomContainer. removeSingleElectron(int position)
Removes the single electron at the given position from the AtomContainer.Methods in org.openscience.cdk that return types with arguments of type ISingleElectron Modifier and Type Method Description List<ISingleElectron>
AtomContainer. getConnectedSingleElectronsList(IAtom atom)
Returns the single electrons connected connected to the specified atom.Iterable<ISingleElectron>
AtomContainer. singleElectrons()
Returns an Iterable for looping over all single electrons in this container.Methods in org.openscience.cdk with parameters of type ISingleElectron Modifier and Type Method Description void
AtomContainer. addSingleElectron(ISingleElectron singleElectron)
Adds a single electron to this AtomContainer.boolean
AtomContainer. contains(ISingleElectron singleElectron)
True, if the AtomContainer contains the given SingleElectron object.int
AtomContainer. getSingleElectronNumber(ISingleElectron singleElectron)
Returns the position of a given single electron in the single electron array.int
AtomContainer. indexOf(ISingleElectron electron)
Access the storage index of a single electron (radical).void
AtomContainer. removeSingleElectron(ISingleElectron singleElectron)
Removes the single electron from the AtomContainer. -
Uses of ISingleElectron in org.openscience.cdk.debug
Classes in org.openscience.cdk.debug that implement ISingleElectron Modifier and Type Class Description class
DebugSingleElectron
Debugging data class.Methods in org.openscience.cdk.debug that return ISingleElectron Modifier and Type Method Description ISingleElectron
DebugAminoAcid. getSingleElectron(int idx)
Get the single electron at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getSingleElectronCount()
.ISingleElectron
DebugAtomContainer. getSingleElectron(int idx)
Get the single electron at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getSingleElectronCount()
.ISingleElectron
DebugBioPolymer. getSingleElectron(int idx)
Get the single electron at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getSingleElectronCount()
.ISingleElectron
DebugCrystal. getSingleElectron(int idx)
Get the single electron at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getSingleElectronCount()
.ISingleElectron
DebugMonomer. getSingleElectron(int idx)
Get the single electron at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getSingleElectronCount()
.ISingleElectron
DebugPolymer. getSingleElectron(int idx)
Get the single electron at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getSingleElectronCount()
.ISingleElectron
DebugRing. getSingleElectron(int idx)
Get the single electron at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getSingleElectronCount()
.ISingleElectron
DebugStrand. getSingleElectron(int idx)
Get the single electron at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getSingleElectronCount()
.ISingleElectron
DebugAminoAcid. removeSingleElectron(int pos)
Removes the single electron at the given position from the AtomContainer.ISingleElectron
DebugAtomContainer. removeSingleElectron(int pos)
Removes the single electron at the given position from the AtomContainer.ISingleElectron
DebugBioPolymer. removeSingleElectron(int pos)
Removes the single electron at the given position from the AtomContainer.ISingleElectron
DebugCrystal. removeSingleElectron(int pos)
Removes the single electron at the given position from the AtomContainer.ISingleElectron
DebugMonomer. removeSingleElectron(int pos)
Removes the single electron at the given position from the AtomContainer.ISingleElectron
DebugPolymer. removeSingleElectron(int pos)
Removes the single electron at the given position from the AtomContainer.ISingleElectron
DebugRing. removeSingleElectron(int pos)
Removes the single electron at the given position from the AtomContainer.ISingleElectron
DebugStrand. removeSingleElectron(int pos)
Removes the single electron at the given position from the AtomContainer.Methods in org.openscience.cdk.debug that return types with arguments of type ISingleElectron Modifier and Type Method Description List<ISingleElectron>
DebugAminoAcid. getConnectedSingleElectronsList(IAtom atom)
Returns the single electrons connected connected to the specified atom.List<ISingleElectron>
DebugAtomContainer. getConnectedSingleElectronsList(IAtom atom)
Returns the single electrons connected connected to the specified atom.List<ISingleElectron>
DebugBioPolymer. getConnectedSingleElectronsList(IAtom atom)
Returns the single electrons connected connected to the specified atom.List<ISingleElectron>
DebugCrystal. getConnectedSingleElectronsList(IAtom atom)
Returns the single electrons connected connected to the specified atom.List<ISingleElectron>
DebugMonomer. getConnectedSingleElectronsList(IAtom atom)
Returns the single electrons connected connected to the specified atom.List<ISingleElectron>
DebugPolymer. getConnectedSingleElectronsList(IAtom atom)
Returns the single electrons connected connected to the specified atom.List<ISingleElectron>
DebugRing. getConnectedSingleElectronsList(IAtom atom)
Returns the single electrons connected connected to the specified atom.List<ISingleElectron>
DebugStrand. getConnectedSingleElectronsList(IAtom atom)
Returns the single electrons connected connected to the specified atom.Iterable<ISingleElectron>
DebugAminoAcid. singleElectrons()
Returns an Iterable for looping over all single electrons in this container.Iterable<ISingleElectron>
DebugAtomContainer. singleElectrons()
Returns an Iterable for looping over all single electrons in this container.Iterable<ISingleElectron>
DebugBioPolymer. singleElectrons()
Returns an Iterable for looping over all single electrons in this container.Iterable<ISingleElectron>
DebugCrystal. singleElectrons()
Returns an Iterable for looping over all single electrons in this container.Iterable<ISingleElectron>
DebugMonomer. singleElectrons()
Returns an Iterable for looping over all single electrons in this container.Iterable<ISingleElectron>
DebugPolymer. singleElectrons()
Returns an Iterable for looping over all single electrons in this container.Iterable<ISingleElectron>
DebugRing. singleElectrons()
Returns an Iterable for looping over all single electrons in this container.Iterable<ISingleElectron>
DebugStrand. singleElectrons()
Returns an Iterable for looping over all single electrons in this container.Methods in org.openscience.cdk.debug with parameters of type ISingleElectron Modifier and Type Method Description void
DebugAminoAcid. addSingleElectron(ISingleElectron ec)
Adds a single electron to this AtomContainer.void
DebugAtomContainer. addSingleElectron(ISingleElectron ec)
Adds a single electron to this AtomContainer.void
DebugBioPolymer. addSingleElectron(ISingleElectron ec)
Adds a single electron to this AtomContainer.void
DebugCrystal. addSingleElectron(ISingleElectron ec)
Adds a single electron to this AtomContainer.void
DebugMonomer. addSingleElectron(ISingleElectron ec)
Adds a single electron to this AtomContainer.void
DebugPolymer. addSingleElectron(ISingleElectron ec)
Adds a single electron to this AtomContainer.void
DebugRing. addSingleElectron(ISingleElectron ec)
Adds a single electron to this AtomContainer.void
DebugStrand. addSingleElectron(ISingleElectron ec)
Adds a single electron to this AtomContainer.boolean
DebugAminoAcid. contains(ISingleElectron ec)
True, if the AtomContainer contains the given SingleElectron object.boolean
DebugAtomContainer. contains(ISingleElectron ec)
True, if the AtomContainer contains the given SingleElectron object.boolean
DebugBioPolymer. contains(ISingleElectron ec)
True, if the AtomContainer contains the given SingleElectron object.boolean
DebugCrystal. contains(ISingleElectron ec)
True, if the AtomContainer contains the given SingleElectron object.boolean
DebugMonomer. contains(ISingleElectron ec)
True, if the AtomContainer contains the given SingleElectron object.boolean
DebugPolymer. contains(ISingleElectron ec)
True, if the AtomContainer contains the given SingleElectron object.boolean
DebugRing. contains(ISingleElectron ec)
True, if the AtomContainer contains the given SingleElectron object.boolean
DebugStrand. contains(ISingleElectron ec)
True, if the AtomContainer contains the given SingleElectron object.int
DebugAminoAcid. getSingleElectronNumber(ISingleElectron bond)
Returns the position of a given single electron in the single electron array.int
DebugBioPolymer. getSingleElectronNumber(ISingleElectron bond)
Returns the position of a given single electron in the single electron array.int
DebugCrystal. getSingleElectronNumber(ISingleElectron bond)
Returns the position of a given single electron in the single electron array.int
DebugMonomer. getSingleElectronNumber(ISingleElectron bond)
Returns the position of a given single electron in the single electron array.int
DebugPolymer. getSingleElectronNumber(ISingleElectron bond)
Returns the position of a given single electron in the single electron array.int
DebugRing. getSingleElectronNumber(ISingleElectron bond)
Returns the position of a given single electron in the single electron array.int
DebugStrand. getSingleElectronNumber(ISingleElectron bond)
Returns the position of a given single electron in the single electron array.int
DebugAtomContainer. indexOf(ISingleElectron electron)
Access the storage index of a single electron (radical).void
DebugAminoAcid. removeSingleElectron(ISingleElectron ec)
Removes the single electron from the AtomContainer.void
DebugAtomContainer. removeSingleElectron(ISingleElectron ec)
Removes the single electron from the AtomContainer.void
DebugBioPolymer. removeSingleElectron(ISingleElectron ec)
Removes the single electron from the AtomContainer.void
DebugCrystal. removeSingleElectron(ISingleElectron ec)
Removes the single electron from the AtomContainer.void
DebugMonomer. removeSingleElectron(ISingleElectron ec)
Removes the single electron from the AtomContainer.void
DebugPolymer. removeSingleElectron(ISingleElectron ec)
Removes the single electron from the AtomContainer.void
DebugRing. removeSingleElectron(ISingleElectron ec)
Removes the single electron from the AtomContainer.void
DebugStrand. removeSingleElectron(ISingleElectron ec)
Removes the single electron from the AtomContainer. -
Uses of ISingleElectron in org.openscience.cdk.interfaces
Methods in org.openscience.cdk.interfaces that return ISingleElectron Modifier and Type Method Description ISingleElectron
IAtomContainer. getSingleElectron(int idx)
Get the single electron at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getSingleElectronCount()
.ISingleElectron
IAtomContainer. removeSingleElectron(int position)
Removes the single electron at the given position from the AtomContainer.Methods in org.openscience.cdk.interfaces that return types with arguments of type ISingleElectron Modifier and Type Method Description List<ISingleElectron>
IAtomContainer. getConnectedSingleElectronsList(IAtom atom)
Returns the single electrons connected connected to the specified atom.Iterable<ISingleElectron>
IAtomContainer. singleElectrons()
Returns an Iterable for looping over all single electrons in this container.Methods in org.openscience.cdk.interfaces with parameters of type ISingleElectron Modifier and Type Method Description void
IAtomContainer. addSingleElectron(ISingleElectron singleElectron)
Adds a single electron to this AtomContainer.boolean
IAtomContainer. contains(ISingleElectron singleElectron)
True, if the AtomContainer contains the given SingleElectron object.int
IAtomContainer. getSingleElectronNumber(ISingleElectron singleElectron)
Deprecated.int
IAtomContainer. indexOf(ISingleElectron electron)
Access the storage index of a single electron (radical).void
IAtomContainer. removeSingleElectron(ISingleElectron singleElectron)
Removes the single electron from the AtomContainer. -
Uses of ISingleElectron in org.openscience.cdk.isomorphism.matchers
Fields in org.openscience.cdk.isomorphism.matchers declared as ISingleElectron Modifier and Type Field Description protected ISingleElectron[]
QueryAtomContainer. singleElectrons
Internal array of single electrons.Methods in org.openscience.cdk.isomorphism.matchers that return ISingleElectron Modifier and Type Method Description ISingleElectron
QueryAtomContainer. getSingleElectron(int idx)
Get the single electron at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getSingleElectronCount()
.ISingleElectron
QueryAtomContainer. removeSingleElectron(int position)
Removes the single electron at the given position from the AtomContainer.Methods in org.openscience.cdk.isomorphism.matchers that return types with arguments of type ISingleElectron Modifier and Type Method Description List<ISingleElectron>
QueryAtomContainer. getConnectedSingleElectronsList(IAtom atom)
Returns an array of all SingleElectron connected to the given atom.Iterable<ISingleElectron>
QueryAtomContainer. singleElectrons()
Returns an Iterable for looping over all single electrons in this container.Methods in org.openscience.cdk.isomorphism.matchers with parameters of type ISingleElectron Modifier and Type Method Description void
QueryAtomContainer. addSingleElectron(ISingleElectron singleElectron)
Adds a single electron to this AtomContainer.boolean
QueryAtomContainer. contains(ISingleElectron singleElectron)
True, if the AtomContainer contains the given SingleElectron object.int
QueryAtomContainer. getSingleElectronNumber(ISingleElectron singleElectron)
Returns the position of a given single electron in the single electron array.int
QueryAtomContainer. indexOf(ISingleElectron electron)
void
QueryAtomContainer. removeSingleElectron(ISingleElectron singleElectron)
Removes the single electron from the AtomContainer. -
Uses of ISingleElectron in org.openscience.cdk.silent
Classes in org.openscience.cdk.silent that implement ISingleElectron Modifier and Type Class Description class
SingleElectron
A Single Electron is an orbital which is occupied by only one electron.Fields in org.openscience.cdk.silent declared as ISingleElectron Modifier and Type Field Description protected ISingleElectron[]
AtomContainer. singleElectrons
Internal array of single electrons.Methods in org.openscience.cdk.silent that return ISingleElectron Modifier and Type Method Description ISingleElectron
AtomContainer. getSingleElectron(int idx)
Get the single electron at the specified idx, the index should be in the range 0 ≤ idx <IAtomContainer.getSingleElectronCount()
.ISingleElectron
AtomContainer. removeSingleElectron(int position)
Removes the single electron at the given position from the AtomContainer.Methods in org.openscience.cdk.silent that return types with arguments of type ISingleElectron Modifier and Type Method Description List<ISingleElectron>
AtomContainer. getConnectedSingleElectronsList(IAtom atom)
Returns the single electrons connected connected to the specified atom.Iterable<ISingleElectron>
AtomContainer. singleElectrons()
Returns an Iterable for looping over all single electrons in this container.Methods in org.openscience.cdk.silent with parameters of type ISingleElectron Modifier and Type Method Description void
AtomContainer. addSingleElectron(ISingleElectron singleElectron)
Adds a single electron to this AtomContainer.boolean
AtomContainer. contains(ISingleElectron singleElectron)
True, if the AtomContainer contains the given SingleElectron object.int
AtomContainer. getSingleElectronNumber(ISingleElectron singleElectron)
Returns the position of a given single electron in the single electron array.int
AtomContainer. indexOf(ISingleElectron electron)
Access the storage index of a single electron (radical).void
AtomContainer. removeSingleElectron(ISingleElectron singleElectron)
Removes the single electron from the AtomContainer.
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