Uses of Interface
org.openscience.cdk.interfaces.IBioPolymer
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Uses of IBioPolymer in org.openscience.cdk
Classes in org.openscience.cdk that implement IBioPolymer Modifier and Type Class Description class
BioPolymer
A BioPolymer is a subclass of a Polymer which is supposed to store additional informations about the Polymer which are connected to BioPolymers.Methods in org.openscience.cdk that return IBioPolymer Modifier and Type Method Description IBioPolymer
BioPolymer. clone()
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Uses of IBioPolymer in org.openscience.cdk.debug
Classes in org.openscience.cdk.debug that implement IBioPolymer Modifier and Type Class Description class
DebugBioPolymer
Debugging data class.class
DebugPDBPolymer
Debugging data class.Methods in org.openscience.cdk.debug that return IBioPolymer Modifier and Type Method Description IBioPolymer
DebugBioPolymer. clone()
Clones thisIChemObject
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Uses of IBioPolymer in org.openscience.cdk.interfaces
Subinterfaces of IBioPolymer in org.openscience.cdk.interfaces Modifier and Type Interface Description interface
IPDBPolymer
A PDBPolymer is a subclass of a BioPolymer which is supposed to store additional informations about the BioPolymer which are connected to BioPolymers.Methods in org.openscience.cdk.interfaces that return IBioPolymer Modifier and Type Method Description IBioPolymer
IBioPolymer. clone()
Returns a deep clone of this IChemObject. -
Uses of IBioPolymer in org.openscience.cdk.protein
Methods in org.openscience.cdk.protein that return IBioPolymer Modifier and Type Method Description IBioPolymer
ProteinPocketFinder. getProtein()
Methods in org.openscience.cdk.protein with parameters of type IBioPolymer Modifier and Type Method Description void
ProteinPocketFinder. setProtein(IBioPolymer protein)
Constructors in org.openscience.cdk.protein with parameters of type IBioPolymer Constructor Description ProteinPocketFinder(IBioPolymer protein, double[][][] grid)
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Uses of IBioPolymer in org.openscience.cdk.protein.data
Classes in org.openscience.cdk.protein.data that implement IBioPolymer Modifier and Type Class Description class
PDBPolymer
An entry in the PDB database. -
Uses of IBioPolymer in org.openscience.cdk.silent
Classes in org.openscience.cdk.silent that implement IBioPolymer Modifier and Type Class Description class
BioPolymer
A BioPolymer is a subclass of a Polymer which is supposed to store additional informations about the Polymer which are connected to BioPolymers.class
PDBPolymer
An entry in the PDB database.Methods in org.openscience.cdk.silent that return IBioPolymer Modifier and Type Method Description IBioPolymer
BioPolymer. clone()
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Uses of IBioPolymer in org.openscience.cdk.tools
Methods in org.openscience.cdk.tools that return IBioPolymer Modifier and Type Method Description static IBioPolymer
ProteinBuilderTool. addAminoAcidAtCTerminus(IBioPolymer protein, IAminoAcid aaToAdd, IStrand strand, IAminoAcid aaToAddTo)
Builds a protein by connecting a new amino acid at the C-terminus of the given strand.static IBioPolymer
ProteinBuilderTool. addAminoAcidAtNTerminus(IBioPolymer protein, IAminoAcid aaToAdd, IStrand strand, IAminoAcid aaToAddTo)
Builds a protein by connecting a new amino acid at the N-terminus of the given strand.static IBioPolymer
ProteinBuilderTool. createProtein(String sequence)
Creates a BioPolymer from a sequence of amino acid as identified by a the sequence of their one letter codes.static IBioPolymer
ProteinBuilderTool. createProtein(String sequence, IChemObjectBuilder builder)
Creates a BioPolymer from a sequence of amino acid as identified by a the sequence of their one letter codes.Methods in org.openscience.cdk.tools with parameters of type IBioPolymer Modifier and Type Method Description static IBioPolymer
ProteinBuilderTool. addAminoAcidAtCTerminus(IBioPolymer protein, IAminoAcid aaToAdd, IStrand strand, IAminoAcid aaToAddTo)
Builds a protein by connecting a new amino acid at the C-terminus of the given strand.static IBioPolymer
ProteinBuilderTool. addAminoAcidAtNTerminus(IBioPolymer protein, IAminoAcid aaToAdd, IStrand strand, IAminoAcid aaToAddTo)
Builds a protein by connecting a new amino acid at the N-terminus of the given strand.
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