Uses of Interface
org.openscience.cdk.interfaces.IAminoAcid
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Uses of IAminoAcid in org.openscience.cdk
Classes in org.openscience.cdk that implement IAminoAcid Modifier and Type Class Description class
AminoAcid
A AminoAcid is Monomer which stores additional amino acid specific informations, like the N-terminus atom.Methods in org.openscience.cdk that return IAminoAcid Modifier and Type Method Description IAminoAcid
AminoAcid. clone()
Clones this AminoAcid object. -
Uses of IAminoAcid in org.openscience.cdk.debug
Classes in org.openscience.cdk.debug that implement IAminoAcid Modifier and Type Class Description class
DebugAminoAcid
Debugging data class.Methods in org.openscience.cdk.debug that return IAminoAcid Modifier and Type Method Description IAminoAcid
DebugAminoAcid. clone()
Clones this AminoAcid object. -
Uses of IAminoAcid in org.openscience.cdk.interfaces
Methods in org.openscience.cdk.interfaces that return IAminoAcid Modifier and Type Method Description IAminoAcid
IAminoAcid. clone()
Returns a deep clone of this IChemObject. -
Uses of IAminoAcid in org.openscience.cdk.silent
Classes in org.openscience.cdk.silent that implement IAminoAcid Modifier and Type Class Description class
AminoAcid
A AminoAcid is Monomer which stores additional amino acid specific informations, like the N-terminus atom.Methods in org.openscience.cdk.silent that return IAminoAcid Modifier and Type Method Description IAminoAcid
AminoAcid. clone()
Clones this AminoAcid object. -
Uses of IAminoAcid in org.openscience.cdk.templates
Methods in org.openscience.cdk.templates that return types with arguments of type IAminoAcid Modifier and Type Method Description static Map<String,IAminoAcid>
AminoAcids. getHashMapBySingleCharCode()
Returns a HashMap where the key is one of G, A, V, L, I, S, T, C, M, D, N, E, Q, R, K, H, F, Y, W and P.static Map<String,IAminoAcid>
AminoAcids. getHashMapByThreeLetterCode()
Returns a HashMap where the key is one of GLY, ALA, VAL, LEU, ILE, SER, THR, CYS, MET, ASP, ASN, GLU, GLN, ARG, LYS, HIS, PHE, TYR, TRP AND PRO. -
Uses of IAminoAcid in org.openscience.cdk.tools
Methods in org.openscience.cdk.tools with parameters of type IAminoAcid Modifier and Type Method Description static IBioPolymer
ProteinBuilderTool. addAminoAcidAtCTerminus(IBioPolymer protein, IAminoAcid aaToAdd, IStrand strand, IAminoAcid aaToAddTo)
Builds a protein by connecting a new amino acid at the C-terminus of the given strand.static IBioPolymer
ProteinBuilderTool. addAminoAcidAtNTerminus(IBioPolymer protein, IAminoAcid aaToAdd, IStrand strand, IAminoAcid aaToAddTo)
Builds a protein by connecting a new amino acid at the N-terminus of the given strand. -
Uses of IAminoAcid in org.openscience.cdk.tools.manipulator
Methods in org.openscience.cdk.tools.manipulator with parameters of type IAminoAcid Modifier and Type Method Description static void
AminoAcidManipulator. addAcidicOxygen(IAminoAcid acid)
Adds the singly bonded oxygen from the acid group of the AminoAcid.static void
AminoAcidManipulator. removeAcidicOxygen(IAminoAcid acid)
Removes the singly bonded oxygen from the acid group of the AminoAcid.
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