Package org.openscience.cdk.group
Interface Refinable
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public interface Refinable
Implementors are graph-like objects that are refinable by the equitable and discrete partition refiners.- Author:
- maclean
- Belongs to CDK module:
- group
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description int
getConnectivity(int vertexI, int vertexJ)
Get the connectivity between two vertices as an integer, to allow for multigraphs : so a single edge is 1, a double edge 2, etc.Partition
getInitialPartition()
Get an initial partition of the vertices of the refinable - for example, by color.int
getVertexCount()
Get the number of vertices in the graph to be refined.Invariant
neighboursInBlock(Set<Integer> block, int vertexIndex)
Given a block (or cell) of a partition, determine the invariant that represents the intersection between the block and the neighbours of vertexIndex supplied.
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Method Detail
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neighboursInBlock
Invariant neighboursInBlock(Set<Integer> block, int vertexIndex)
Given a block (or cell) of a partition, determine the invariant that represents the intersection between the block and the neighbours of vertexIndex supplied.- Parameters:
block
- a cell of the partition under refinementvertexIndex
- the element to compare- Returns:
- the size of the intersection between the neighbours and the block
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getVertexCount
int getVertexCount()
Get the number of vertices in the graph to be refined.- Returns:
- a count of the vertices in the underlying graph
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getConnectivity
int getConnectivity(int vertexI, int vertexJ)
Get the connectivity between two vertices as an integer, to allow for multigraphs : so a single edge is 1, a double edge 2, etc. If there is no edge, then 0 should be returned.- Parameters:
vertexI
- a vertex of the graphvertexJ
- a vertex of the graph- Returns:
- the multiplicity of the edge (0, 1, 2, 3, ...)
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getInitialPartition
Partition getInitialPartition()
Get an initial partition of the vertices of the refinable - for example, by color.- Returns:
- a partition of the vertices
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