static CycleFinder |
Cycles.all() |
Create a cycle finder which will compute all simple cycles in a molecule.
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static CycleFinder |
Cycles.all(int length) |
All cycles of smaller than or equal to the specified length.
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static CycleFinder |
Cycles.allOrVertexShort() |
Deprecated.
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static CycleFinder |
Cycles.cdkAromaticSet() |
Create a cycle finder which will compute a set of cycles traditionally
used by the CDK to test for aromaticity.
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static CycleFinder |
Cycles.edgeShort() |
Create a cycle finder which will compute the shortest cycles of each
vertex in a molecule.
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static CycleFinder |
Cycles.essential() |
Create a cycle finder which will compute the essential cycles of a
molecule.
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static CycleFinder |
Cycles.mcb() |
Create a cycle finder which will compute the minimum cycle basis (MCB) of
a molecule.
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static CycleFinder |
Cycles.or(CycleFinder primary,
CycleFinder auxiliary) |
Use an auxiliary cycle finder if the primary method was intractable.
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static CycleFinder |
Cycles.relevant() |
Create a cycle finder which will compute the relevant cycle basis (RC) of
a molecule.
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static CycleFinder |
Cycles.tripletShort() |
Create a cycle finder which will compute the triplet short cycles of a
molecule.
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static CycleFinder |
Cycles.unchorded(CycleFinder original) |
Derive a new cycle finder that only provides cycles without a chord.
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static CycleFinder |
Cycles.vertexShort() |
Create a cycle finder which will compute the shortest cycles of each
vertex in a molecule.
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