Uses of Interface
org.openscience.cdk.geometry.cip.ILigand

Packages that use ILigand

Package	Description
org.openscience.cdk.geometry.cip
org.openscience.cdk.geometry.cip.rules

Uses of ILigand in org.openscience.cdk.geometry.cip

Classes in org.openscience.cdk.geometry.cip that implement ILigand

Modifier and Type	Class	Description
class	ImplicitHydrogenLigand	Subclass of Ligand to which no further recursion must be applied.
class	Ligand	Concept of a ligand in CIP terms, reflecting a side chain of a central atom that can have precedence over another.

Methods in org.openscience.cdk.geometry.cip that return ILigand

Modifier and Type	Method	Description
static ILigand	CIPTool.defineLigand(IAtomContainer container, VisitedAtoms visitedAtoms, int chiralAtom, int ligandAtom)	Creates a ligand attached to a single chiral atom, where the involved atoms are identified by there index in the IAtomContainer.
static ILigand[]	CIPTool.getLigandLigands(ILigand ligand)	Returns a CIP-expanded array of side chains of a ligand.
static ILigand[]	CIPTool.order(ILigand[] ligands)	Reorders the ILigand objects in the array according to the CIP rules.

Methods in org.openscience.cdk.geometry.cip with parameters of type ILigand

Modifier and Type	Method	Description
static boolean	CIPTool.checkIfAllLigandsAreDifferent(ILigand[] ligands)	Checks if each next ILigand is different from the previous one according to the CIPLigandRule.
static ILigand[]	CIPTool.getLigandLigands(ILigand ligand)	Returns a CIP-expanded array of side chains of a ligand.
static ILigand[]	CIPTool.order(ILigand[] ligands)	Reorders the ILigand objects in the array according to the CIP rules.

Uses of ILigand in org.openscience.cdk.geometry.cip.rules

Methods in org.openscience.cdk.geometry.cip.rules with parameters of type ILigand

Modifier and Type	Method	Description
int	CIPLigandRule.compare(ILigand ligand1, ILigand ligand2)	Compares two ligands according to the particular sequence sub rule.