GraphOnlyFingerprinter (cdk 2.9 API)

java.lang.Object
- org.openscience.cdk.fingerprint.AbstractFingerprinter
- - org.openscience.cdk.fingerprint.Fingerprinter
  - - org.openscience.cdk.fingerprint.GraphOnlyFingerprinter

All Implemented Interfaces:

IFingerprinter
```
public class GraphOnlyFingerprinter
extends Fingerprinter
```
Specialized version of the Fingerprinter which does not take bond orders into account.

Author:

egonw

See Also:

Fingerprinter

Source code:
main

Belongs to CDK module:
standard

Keywords:

fingerprint, similarity

Created on:

2007-01-11

Field Summary
- Fields inherited from class org.openscience.cdk.fingerprint.Fingerprinter
  DEFAULT_SEARCH_DEPTH, DEFAULT_SIZE

Constructor Summary

Constructors
Constructor	Description
`GraphOnlyFingerprinter()`	Creates a fingerprint generator of length `defaultSize` and with a search depth of `defaultSearchDepth`.
`GraphOnlyFingerprinter(int size)`
`GraphOnlyFingerprinter(int size, int searchDepth)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`BitSet`	`getBitFingerprint(IAtomContainer container, int size)`
`protected String`	`getBondSymbol(IBond bond)`	Gets the bondSymbol attribute of the Fingerprinter class.

Methods inherited from class org.openscience.cdk.fingerprint.Fingerprinter
encodePaths, findPathes, getBitFingerprint, getBitFingerprint, getCountFingerprint, getParameters, getRawFingerprint, getSearchDepth, getSize, setHashPseudoAtoms, setPathLimit

Methods inherited from class org.openscience.cdk.fingerprint.AbstractFingerprinter
getFingerprint, getVersionDescription

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.openscience.cdk.fingerprint.IFingerprinter
getFingerprint, getVersionDescription

- Constructor Detail
  - GraphOnlyFingerprinter
```
public GraphOnlyFingerprinter()
```
    Creates a fingerprint generator of length defaultSize and with a search depth of defaultSearchDepth.
  - GraphOnlyFingerprinter
```
public GraphOnlyFingerprinter(int size)
```
  - GraphOnlyFingerprinter
```
public GraphOnlyFingerprinter(int size,
                              int searchDepth)
```
- Method Detail
  - getBondSymbol
```
protected String getBondSymbol(IBond bond)
```
    Gets the bondSymbol attribute of the Fingerprinter class. Because we do not consider bond orders to be important, we just return "";
    
    Overrides:
    
    getBondSymbol in class Fingerprinter
    
    Parameters:
    
    bond - Description of the Parameter
    
    Returns:
    
    The bondSymbol value
  - getBitFingerprint
```
public BitSet getBitFingerprint(IAtomContainer container,
                                int size)
                         throws Exception
```
    Throws:
    
    Exception