Package org.openscience.cdk.fingerprint

Class BitSetFingerprint

java.lang.Object

org.openscience.cdk.fingerprint.BitSetFingerprint

All Implemented Interfaces:

Serializable, IBitFingerprint

public class BitSetFingerprint
extends Object
implements IBitFingerprint

Author:

jonalv

See Also:

Serialized Form

Source code:

main

Belongs to CDK module:

standard

Constructor Summary

Constructors

Constructor	Description
BitSetFingerprint()
BitSetFingerprint(int size)
BitSetFingerprint(BitSet bitset)
BitSetFingerprint(IBitFingerprint fingerprint)

Method Summary

Modifier and Type	Method	Description
void	and(IBitFingerprint fingerprint)	Performs a logical AND of the bits in this target bit set with the bits in the argument fingerprint.
BitSet	asBitSet()	Returns a BitSet representation of the fingerprint.
int	cardinality()	Returns the number of bits set to true in the fingerprint.
boolean	equals(Object obj)
boolean	get(int index)	Returns the value of the bit with the specified index.
int[]	getSetbits()	Returns a listing of the bits in the fingerprint that are set to true.
int	hashCode()
void	or(IBitFingerprint fingerprint)	Performs a logical OR of the bits in this target bit set with the bits in the argument fingerprint.
void	set(int i)	Sets the bit at the specified index to true.
void	set(int index, boolean b)	Sets the bit at the specified index to the specified value.
long	size()	Returns the size of the fingerprint, i.e., the number of hash bins.

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BitSetFingerprint

public BitSetFingerprint(BitSet bitset)

BitSetFingerprint

public BitSetFingerprint()

BitSetFingerprint

public BitSetFingerprint(int size)

BitSetFingerprint

public BitSetFingerprint(IBitFingerprint fingerprint)

Method Detail

cardinality

public int cardinality()

Description copied from interface: IBitFingerprint

Returns the number of bits set to true in the fingerprint.

Specified by:

cardinality in interface IBitFingerprint

Returns:

the number of true bits.

size

public long size()

Description copied from interface: IBitFingerprint

Returns the size of the fingerprint, i.e., the number of hash bins.

Specified by:

size in interface IBitFingerprint

Returns:

the size of the fingerprint.

and

public void and(IBitFingerprint fingerprint)

Description copied from interface: IBitFingerprint

Performs a logical AND of the bits in this target bit set with the bits in the argument fingerprint. This fingerprint is modified so that each bit in it has the value true if and only if it both initially had the value true and the corresponding bit in the fingerprint argument also had the value true.

Specified by:

and in interface IBitFingerprint

Parameters:

fingerprint - the fingerprint with which to perform the AND operation

or

public void or(IBitFingerprint fingerprint)

Description copied from interface: IBitFingerprint

Performs a logical OR of the bits in this target bit set with the bits in the argument fingerprint. This operation can also be seen as merging two fingerprints. This fingerprint is modified so that each bit in it has the value true if and only if it either already had the value true or the corresponding bit in the bit set argument has the value true.

Specified by:

or in interface IBitFingerprint

Parameters:

fingerprint - the fingerprint with which to perform the OR operation

get

public boolean get(int index)

Description copied from interface: IBitFingerprint

Returns the value of the bit with the specified index. The value is true if the bit with the index index is currently set in this fingerprint; otherwise, the result is false.

Specified by:

get in interface IBitFingerprint

Parameters:

index - the index of the bit to return the value for

Returns:

the value of the bit at index

set

public void set(int index,
                boolean b)

Description copied from interface: IBitFingerprint

Sets the bit at the specified index to the specified value.

Specified by:

set in interface IBitFingerprint

Parameters:

index - the index of the bit to change

b - the new value for the bit at position index

asBitSet

public BitSet asBitSet()

Description copied from interface: IBitFingerprint

Returns a BitSet representation of the fingerprint. This might take significantly more memory!

Specified by:

asBitSet in interface IBitFingerprint

Returns:

the fingerprint as a BitSet

set

public void set(int i)

Description copied from interface: IBitFingerprint

Sets the bit at the specified index to true.

Specified by:

set in interface IBitFingerprint

Parameters:

i - index

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

getSetbits

public int[] getSetbits()

Description copied from interface: IBitFingerprint

Returns a listing of the bits in the fingerprint that are set to true.

Specified by:

getSetbits in interface IBitFingerprint

Returns:

listing of all bits that are set