DepictionGenerator |
DepictionGenerator.withAnnotationColor(Color color) |
Set the color annotations (e.g.
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DepictionGenerator |
DepictionGenerator.withAnnotationScale(double scale) |
Set the size of annotations relative to atom symbols.
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DepictionGenerator |
DepictionGenerator.withAromaticDisplay() |
When aromaticity is set on bonds, display this in the diagram.
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DepictionGenerator |
DepictionGenerator.withAtomColors() |
Color atom symbols using typical colors, oxygens are red, nitrogens are
blue, etc.
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DepictionGenerator |
DepictionGenerator.withAtomColors(IAtomColorer colorer) |
Color atom symbols using provided colorer.
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DepictionGenerator |
DepictionGenerator.withAtomMapHighlight() |
Adds to the highlight the coloring of reaction atom-maps.
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DepictionGenerator |
DepictionGenerator.withAtomMapHighlight(Color[] colors) |
Adds to the highlight the coloring of reaction atom-maps.
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DepictionGenerator |
DepictionGenerator.withAtomMapNumbers() |
Display atom-atom mapping numbers on a reaction.
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DepictionGenerator |
DepictionGenerator.withAtomNumbers() |
Display atom numbers on the molecule or reaction.
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DepictionGenerator |
DepictionGenerator.withAtomValues() |
Display atom values on the molecule or reaction.
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DepictionGenerator |
DepictionGenerator.withBackgroundColor(Color color) |
Change the background color.
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DepictionGenerator |
DepictionGenerator.withCarbonSymbols() |
Display atom symbols for all atoms in the molecule.
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DepictionGenerator |
DepictionGenerator.withDeuteriumSymbol(boolean v) |
Indicate whether 2H should be rendered as 'D'.
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DepictionGenerator |
DepictionGenerator.withFillToFit() |
Resize depictions to fill all available space (only if a size is specified).
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DepictionGenerator |
DepictionGenerator.withHighlight(Iterable<? extends IChemObject> chemObjs,
Color color) |
Highlight the provided set of atoms and bonds in the depiction in the
specified color.
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DepictionGenerator |
DepictionGenerator.withMappedRxnAlign(boolean val) |
Specifies that reactions with atom-atom mappings should have their reactants/product
coordinates aligned.
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DepictionGenerator |
DepictionGenerator.withMargin(double m) |
Specify a desired size of margin.
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DepictionGenerator |
DepictionGenerator.withMolTitle() |
Display a molecule title with each depiction.
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DepictionGenerator |
DepictionGenerator.withOuterGlowHighlight() |
Highlights are shown as an outer glow around the atom symbols and bonds
rather than recoloring.
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DepictionGenerator |
DepictionGenerator.withOuterGlowHighlight(double width) |
Highlights are shown as an outer glow around the atom symbols and bonds
rather than recoloring.
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DepictionGenerator |
DepictionGenerator.withPadding(double p) |
Specify a desired size of padding for molecule sets and reactions.
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<T extends IGeneratorParameter<S>,S,U extends S> DepictionGenerator |
DepictionGenerator.withParam(Class<T> key,
U value) |
Low-level option method to set a rendering model parameter.
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DepictionGenerator |
DepictionGenerator.withRxnTitle() |
Display a reaction title with the depiction.
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DepictionGenerator |
DepictionGenerator.withSize(double w,
double h) |
Specify a desired size of depiction.
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DepictionGenerator |
DepictionGenerator.withTerminalCarbons() |
Display atom symbols for terminal carbons (i.e.
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DepictionGenerator |
DepictionGenerator.withTitleColor(Color color) |
Set the color titles will appear in.
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DepictionGenerator |
DepictionGenerator.withTitleScale(double scale) |
Set the size of titles compared to atom symbols.
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DepictionGenerator |
DepictionGenerator.withZoom(double zoom) |
Specify a desired zoom factor - this changes the base size of a
depiction and is used for uniformly making depictions bigger.
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