Package org.openscience.cdk.config.isotopes

Class IsotopeHandler

java.lang.Object

org.xml.sax.helpers.DefaultHandler

org.openscience.cdk.config.isotopes.IsotopeHandler

All Implemented Interfaces:

ContentHandler, DTDHandler, EntityResolver, ErrorHandler

public class IsotopeHandler
extends DefaultHandler

Reads an isotope list in CML2 format. An example definition is:

 <isotopeList id="H">
   <isotope id="H1" isotopeNumber="1" elementTyp="H">
     <abundance dictRef="cdk:relativeAbundance">100.0</abundance>
     <scalar dictRef="cdk:exactMass">1.00782504</scalar>
     <scalar dictRef="cdk:atomicNumber">1</scalar>
   </isotope>
   <isotope id="H2" isotopeNumber="2" elementTyp="H">
     <abundance dictRef="cdk:relativeAbundance">0.015</abundance>
     <scalar dictRef="cdk:exactMass">2.01410179</scalar>
     <scalar dictRef="cdk:atomicNumber">1</scalar>
   </isotope>
 </isotopeList>
 

Source code:

main

Belongs to CDK module:

extra

Constructor Summary

Constructors

Constructor	Description
IsotopeHandler(IChemObjectBuilder builder)	Constructs an IsotopeHandler used by the IsotopeReader.

Method Summary

Modifier and Type	Method	Description
void	characters(char[] chars, int start, int length)
void	endElement(String uri, String local, String raw)
List<IIsotope>	getIsotopes()	Returns the isotopes read from the XML file.
void	startDocument()
void	startElement(String uri, String local, String raw, Attributes atts)

Methods inherited from class org.xml.sax.helpers.DefaultHandler

endDocument, endPrefixMapping, error, fatalError, ignorableWhitespace, notationDecl, processingInstruction, resolveEntity, setDocumentLocator, skippedEntity, startPrefixMapping, unparsedEntityDecl, warning

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.xml.sax.ContentHandler

declaration

Constructor Details

IsotopeHandler

public IsotopeHandler(IChemObjectBuilder builder)

Constructs an IsotopeHandler used by the IsotopeReader.

Parameters:

builder - The IChemObjectBuilder used to create new IIsotope's.

Method Details

getIsotopes

public List<IIsotope> getIsotopes()

Returns the isotopes read from the XML file.

Returns:

A List object with all isotopes

startDocument

public void startDocument()

Specified by:

startDocument in interface ContentHandler

Overrides:

startDocument in class DefaultHandler

endElement

public void endElement(String uri,
 String local,
 String raw)

Specified by:

endElement in interface ContentHandler

Overrides:

endElement in class DefaultHandler

startElement

public void startElement(String uri,
 String local,
 String raw,
 Attributes atts)

Specified by:

startElement in interface ContentHandler

Overrides:

startElement in class DefaultHandler

characters

public void characters(char[] chars,
 int start,
 int length)

Specified by:

characters in interface ContentHandler

Overrides:

characters in class DefaultHandler