org.openscience.cdk.fingerprint

Interface IBitFingerprint

All Superinterfaces:

Serializable

All Known Implementing Classes:

BitSetFingerprint, IntArrayFingerprint

public interface IBitFingerprint
extends Serializable

Interface for bit fingerprint representations.

Author:

jonalv

Source code:

master

Belongs to CDK module:

core

Method Summary

Methods

Modifier and Type	Method and Description
void	and(IBitFingerprint fingerprint) Performs a logical AND of the bits in this target bit set with the bits in the argument fingerprint.
BitSet	asBitSet() Returns a BitSet representation of the fingerprint.
int	cardinality() Returns the number of bits set to true in the fingerprint.
boolean	get(int index) Returns the value of the bit with the specified index.
int[]	getSetbits() Returns a listing of the bits in the fingerprint that are set to true.
void	or(IBitFingerprint fingerprint) Performs a logical OR of the bits in this target bit set with the bits in the argument fingerprint.
void	set(int i) Sets the bit at the specified index to true.
void	set(int index, boolean value) Sets the bit at the specified index to the specified value.
long	size() Returns the size of the fingerprint, i.e., the number of hash bins.

Method Detail

cardinality

int cardinality()

Returns the number of bits set to true in the fingerprint.

Returns:

the number of true bits.

size

long size()

Returns the size of the fingerprint, i.e., the number of hash bins.

Returns:

the size of the fingerprint.

and

void and(IBitFingerprint fingerprint)

Performs a logical AND of the bits in this target bit set with the bits in the argument fingerprint. This fingerprint is modified so that each bit in it has the value true if and only if it both initially had the value true and the corresponding bit in the fingerprint argument also had the value true.

Parameters:

fingerprint - the fingerprint with which to perform the AND operation

Throws:

IllegalArgumentException - if the two fingerprints are not of same size

or

void or(IBitFingerprint fingerprint)

Performs a logical OR of the bits in this target bit set with the bits in the argument fingerprint. This operation can also be seen as merging two fingerprints. This fingerprint is modified so that each bit in it has the value true if and only if it either already had the value true or the corresponding bit in the bit set argument has the value true.

Parameters:

fingerprint - the fingerprint with which to perform the OR operation

Throws:

IllegalArgumentException - if the two fingerprints are not of same size

get

boolean get(int index)

Returns the value of the bit with the specified index. The value is true if the bit with the index index is currently set in this fingerprint; otherwise, the result is false.

Parameters:

index - the index of the bit to return the value for

Returns:

the value of the bit at index

set

void set(int index,
       boolean value)

Sets the bit at the specified index to the specified value.

Parameters:

index - the index of the bit to change

value - the new value for the bit at position index

asBitSet

BitSet asBitSet()

Returns a BitSet representation of the fingerprint. This might take significantly more memory!

Returns:

the fingerprint as a BitSet

set

void set(int i)

Sets the bit at the specified index to true.

Parameters:

i - index

getSetbits

int[] getSetbits()

Returns a listing of the bits in the fingerprint that are set to true.

Returns:

listing of all bits that are set